| RVdb StrainID | CNZ00006 | GenBank Accession | ON989186.1 |
| Species | RVC | Sequence Length | 5725 nt |
| Serotype | 56 Checked by RVdb | Serotype (GenBank) | 56 |
| Definition | Rhinovirus C strain RV-C56-USA-Nov-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-C56-USA-Nov-2020-Tempe-AZ | Sampling Date | from 2020 to 2021-03-31 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017905 | 1A (VP4) | 93 | 293 | 0 | 0 | 201 | |
| SQC017906 | 1B (VP2) | 294 | 1079 | 0 | 0 | 786 | |
| SQC017907 | 1C (VP3) | 1080 | 1797 | 0 | 0 | 718 | |
| SQC017908 | 1D (VP1) | 1798 | 2654 | 0 | 0 | 857 | |
| SQC017909 | 2A (P2-A) | 2655 | 3062 | 0 | 0 | 408 | |
| SQC017910 | 2B (P2-B) | 3063 | 3359 | 0 | 0 | 297 | |
| SQC017911 | 2C (P2-C) | 3360 | 4337 | 0 | 0 | 978 | |
| SQC017912 | 3A (P3-A) | 4338 | 4562 | 0 | 0 | 225 | |
| SQC017913 | 3B (VPg) | 4563 | 4628 | 0 | 0 | 66 | |
| SQC017914 | CDS | 93 | 0 | 0 | 1 | 5633 | |
| SQC017915 | protease 3C | 4629 | 5177 | 0 | 0 | 549 | |
| SQC017916 | VP4/2 | 93 | 523 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC018536 | CDS | 1 | 1877 | 0 | 1 | 1877 | |
| SPC018537 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC018538 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC018539 | 1D (VP1) | 567 | 848 | 0 | 0 | 282 | |
| SPC018540 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC018541 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC018542 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC018543 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC018544 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC018545 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC018546 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC018547 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |