| RVdb StrainID | CNZ00001 | GenBank Accession | ON989196.1 |
| Species | RVC | Sequence Length | 3551 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus C strain RV-C1-USA-Feb-2021-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-C1-USA-Feb-2021-Tempe-AZ | Sampling Date | from 2021 to 2021-03-31 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | individual with influenza-like illness | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017898 | 1B (VP2) | 0 | 714 | 1 | 0 | 714 | |
| SQC017899 | 1C (VP3) | 715 | 1423 | 0 | 0 | 709 | |
| SQC017900 | 1D (VP1) | 1424 | 2239 | 0 | 0 | 816 | |
| SQC017901 | 2A (P2-A) | 2240 | 2662 | 0 | 0 | 423 | |
| SQC017902 | 2B (P2-B) | 2663 | 2956 | 0 | 0 | 294 | |
| SQC017903 | 2C (P2-C) | 2957 | 0 | 0 | 1 | 595 | |
| SQC017904 | CDS | 0 | 0 | 1 | 1 | 3551 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC018575 | CDS | 1 | 1183 | 0 | 1 | 1183 | |
| SPC018576 | 1D (VP1) | 472 | 746 | 0 | 0 | 275 | |
| SPC018577 | 1B (VP2) | 1 | 238 | 1 | 0 | 238 | |
| SPC018578 | 1C (VP3) | 239 | 471 | 0 | 0 | 233 | |
| SPC018579 | 2A (P2-A) | 747 | 887 | 0 | 0 | 141 | |
| SPC018580 | 2B (P2-B) | 888 | 985 | 0 | 0 | 98 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |