| RVdb StrainID | CNS00003 | GenBank Accession | ON989191.1 |
| Species | RVC | Sequence Length | 2069 nt |
| Serotype | 51 | Serotype (GenBank) | 51 |
| Definition | Rhinovirus C strain RV-C51-USA-Feb-2021-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-C51-USA-Feb-2021-Tempe-AZ | Sampling Date | from 2021 to 2021-03-31 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013427 | 1A (VP4) | 88 | 288 | 0 | 0 | 201 | |
| SQC013428 | 1B (VP2) | 289 | 1073 | 0 | 0 | 785 | |
| SQC013429 | 1C (VP3) | 1074 | 1782 | 0 | 0 | 709 | |
| SQC013430 | CDS | 88 | 0 | 0 | 1 | 1982 | |
| SQC013431 | VP4/2 | 88 | 517 | 0 | 0 | 430 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC018565 | CDS | 1 | 660 | 0 | 1 | 660 | |
| SPC018566 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC018567 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC018568 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC018569 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |