| RVdb StrainID | CNP00002 | GenBank Accession | ON989195.1 |
| Species | RVC | Sequence Length | 2617 nt |
| Serotype | 56 Checked by RVdb | Serotype (GenBank) | 56 |
| Definition | Rhinovirus C strain RV-C56-USA-Dec-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-C56-USA-Dec-2020-Tempe-AZ | Sampling Date | from 2020 to 2021-03-31 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | individual with influenza-like illness | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008928 | 1C (VP3) | 330 | 1047 | 0 | 0 | 718 | |
| SQC008929 | 1D (VP1) | 1048 | 1886 | 0 | 0 | 839 | |
| SQC008930 | 2A (P2-A) | 1887 | 2312 | 0 | 0 | 426 | |
| SQC008931 | 2B (P2-B) | 2313 | 2609 | 0 | 0 | 297 | |
| SQC008932 | CDS | 0 | 0 | 1 | 1 | 2617 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC018570 | CDS | 1 | 872 | 0 | 1 | 872 | |
| SPC018571 | 1D (VP1) | 347 | 628 | 0 | 0 | 282 | |
| SPC018572 | 1C (VP3) | 110 | 346 | 0 | 0 | 237 | |
| SPC018573 | 2A (P2-A) | 629 | 770 | 0 | 0 | 142 | |
| SPC018574 | 2B (P2-B) | 771 | 869 | 0 | 0 | 99 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |