RVdb StrainID CNM00005 GenBank Accession ON989188.1
Species RVC Sequence Length 4768 nt
Serotype Checked by RVdb Serotype (GenBank) 1
Definition Rhinovirus C strain RV-C1-USA-Jan-2021-Tempe-AZ polyprotein gene, partial cds GenBank Submission Date 2022-11-03
Strain Name RV-C1-USA-Jan-2021-Tempe-AZ Sampling Date 2021
Sampling Country USA Sampling location a university clinic in the Southwest United States
Isolation Source influenza-like Illness NCBI Taxon ID 463676
Sequencing Technology Illumina Assembly Method MEGAHIT v. 1.2.9.

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQC004448 1A (VP4) 86 286 0 0 201
SQC004449 1B (VP2) 287 1077 0 0 791
SQC004450 1C (VP3) 1078 1786 0 0 709
SQC004451 1D (VP1) 1787 2602 0 0 816
SQC004452 2A (P2-A) 2603 3025 0 0 423
SQC004453 2B (P2-B) 3026 3319 0 0 294
SQC004454 2C (P2-C) 3320 4294 0 0 975
SQC004455 3A (P3-A) 4295 4522 0 0 228
SQC004456 3B (VPg) 4523 4588 0 0 66
SQC004457 CDS 86 4768 0 1 4683
SQC004458 VP4/2 86 516 0 0 431
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPC018548 CDS 1 1561 0 1 1561
SPC018549 VP4/2 1 145 0 0 145
SPC018550 2C (P2-C) 1079 1403 0 0 325
SPC018551 1D (VP1) 565 839 0 0 275
SPC018552 1B (VP2) 68 331 0 0 264
SPC018553 1C (VP3) 332 564 0 0 233
SPC018554 2A (P2-A) 840 980 0 0 141
SPC018555 2B (P2-B) 981 1078 0 0 98
SPC018556 3A (P3-A) 1404 1479 0 0 76
SPC018557 1A (VP4) 1 67 0 0 67
SPC018558 3B (VPg) 1480 1501 0 0 22
PMID Title Publication Year Journal View in RVdb
36168937 Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. 2022 Influenza Other Respir Viruses View More