RVdb StrainID | CNM00005 | GenBank Accession | ON989188.1 |
Species | RVC | Sequence Length | 4768 nt |
Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
Definition | Rhinovirus C strain RV-C1-USA-Jan-2021-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
Strain Name | RV-C1-USA-Jan-2021-Tempe-AZ | Sampling Date | 2021 |
Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
Isolation Source | influenza-like Illness | NCBI Taxon ID | 463676 |
Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQC004448 | 1A (VP4) | 86 | 286 | 0 | 0 | 201 | |
SQC004449 | 1B (VP2) | 287 | 1077 | 0 | 0 | 791 | |
SQC004450 | 1C (VP3) | 1078 | 1786 | 0 | 0 | 709 | |
SQC004451 | 1D (VP1) | 1787 | 2602 | 0 | 0 | 816 | |
SQC004452 | 2A (P2-A) | 2603 | 3025 | 0 | 0 | 423 | |
SQC004453 | 2B (P2-B) | 3026 | 3319 | 0 | 0 | 294 | |
SQC004454 | 2C (P2-C) | 3320 | 4294 | 0 | 0 | 975 | |
SQC004455 | 3A (P3-A) | 4295 | 4522 | 0 | 0 | 228 | |
SQC004456 | 3B (VPg) | 4523 | 4588 | 0 | 0 | 66 | |
SQC004457 | CDS | 86 | 4768 | 0 | 1 | 4683 | |
SQC004458 | VP4/2 | 86 | 516 | 0 | 0 | 431 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPC018548 | CDS | 1 | 1561 | 0 | 1 | 1561 | |
SPC018549 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPC018550 | 2C (P2-C) | 1079 | 1403 | 0 | 0 | 325 | |
SPC018551 | 1D (VP1) | 565 | 839 | 0 | 0 | 275 | |
SPC018552 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
SPC018553 | 1C (VP3) | 332 | 564 | 0 | 0 | 233 | |
SPC018554 | 2A (P2-A) | 840 | 980 | 0 | 0 | 141 | |
SPC018555 | 2B (P2-B) | 981 | 1078 | 0 | 0 | 98 | |
SPC018556 | 3A (P3-A) | 1404 | 1479 | 0 | 0 | 76 | |
SPC018557 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
SPC018558 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |