| RVdb StrainID | CNC03834 | GenBank Accession | KP282614.1 |
| Species | RVC | Sequence Length | 7054 nt |
| Serotype | 54 Checked by RVdb | Serotype (GenBank) | 54 |
| Definition | Human rhinovirus C54 isolate D3490 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | D3490 | Sampling Date | 2009-05-11 |
| Sampling Country | Spain | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 1604833 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | Codoncode Aligner software v. 3.7.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC002906 | 1A (VP4) | 608 | 808 | 0 | 0 | 201 | |
| SQC002907 | 1B (VP2) | 809 | 1597 | 0 | 0 | 789 | |
| SQC002908 | 1C (VP3) | 1598 | 2314 | 0 | 0 | 717 | |
| SQC002909 | 1D (VP1) | 2315 | 3142 | 0 | 0 | 828 | |
| SQC002910 | 2A (P2-A) | 3143 | 3556 | 0 | 0 | 414 | |
| SQC002911 | 2B (P2-B) | 3557 | 3853 | 0 | 0 | 297 | |
| SQC002912 | 2C (P2-C) | 3854 | 4831 | 0 | 0 | 978 | |
| SQC002913 | 3A (P3-A) | 4832 | 5056 | 0 | 0 | 225 | |
| SQC002914 | 3B (VPg) | 5057 | 5122 | 0 | 0 | 66 | |
| SQC002915 | 3D | 5672 | 7051 | 0 | 0 | 1380 | |
| SQC002916 | 5'UTR | 1 | 607 | 0 | 0 | 607 | |
| SQC002917 | CDS | 608 | 7054 | 0 | 0 | 6447 | |
| SQC002918 | protease 3C | 5123 | 5671 | 0 | 0 | 549 | |
| SQC002919 | VP4/2 | 608 | 1038 | 0 | 0 | 431 | |
| SQC002920 | genome | 1 | 7054 | 0 | 1 | 7054 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC005062 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC005063 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC005064 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC005065 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC005066 | 1D (VP1) | 570 | 841 | 0 | 0 | 272 | |
| SPC005067 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC005068 | 1C (VP3) | 331 | 569 | 0 | 0 | 239 | |
| SPC005069 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC005070 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC005071 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC005072 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC005073 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC005074 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 25606972 | Identification of a novel human rhinovirus C type by antibody capture VIDISCA-454. | 2015 | Viruses | View More |