RVdb StrainID CNC00004 GenBank Accession ON989190.1
Species RVC Sequence Length 2726 nt
Serotype 17  Checked by RVdb Serotype (GenBank) 17
Definition Rhinovirus C strain RV-C17-USA-Feb-2021-Tempe-AZ polyprotein gene, partial cds GenBank Submission Date 2022-11-03
Strain Name RV-C17-USA-Feb-2021-Tempe-AZ Sampling Date 2021
Sampling Country USA Sampling location a university clinic in the Southwest United States
Isolation Source influenza-like Illness NCBI Taxon ID 463676
Sequencing Technology Illumina Assembly Method MEGAHIT v. 1.2.9.

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQC000001 1A (VP4) 92 292 0 0 201
SQC000002 1B (VP2) 293 1081 0 0 789
SQC000003 1C (VP3) 1082 1795 0 0 714
SQC000004 1D (VP1) 1796 2614 0 0 819
SQC000005 CDS 92 0 0 1 2635
SQC000006 VP4/2 92 522 0 0 431
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPC018559 CDS 1 878 0 1 878
SPC018560 VP4/2 1 145 0 0 145
SPC018561 1D (VP1) 567 847 0 0 281
SPC018562 1B (VP2) 68 330 0 0 263
SPC018563 1C (VP3) 331 566 0 0 236
SPC018564 1A (VP4) 1 67 0 0 67
PMID Title Publication Year Journal View in RVdb
36168937 Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. 2022 Influenza Other Respir Viruses View More