| RVdb StrainID | BNZ01516 | GenBank Accession | FJ445130.1 |
| Species | RVB | Sequence Length | 7223 nt |
| Serotype | 42 Checked by RVdb | Serotype (GenBank) | 42 |
| Definition | Human rhinovirus 42 strain ATCC VR-338, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | ATCC VR-338 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147683 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB007865 | 1A (VP4) | 633 | 839 | 0 | 0 | 207 | |
| SQB007866 | 1B (VP2) | 840 | 1619 | 0 | 0 | 780 | |
| SQB007867 | 1C (VP3) | 1620 | 2327 | 0 | 0 | 708 | |
| SQB007868 | 1D (VP1) | 2328 | 3191 | 0 | 0 | 864 | |
| SQB007869 | 2A (P2-A) | 3192 | 3632 | 0 | 0 | 441 | |
| SQB007870 | 2B (P2-B) | 3633 | 3923 | 0 | 0 | 291 | |
| SQB007871 | 2C (P2-C) | 3924 | 4913 | 0 | 0 | 990 | |
| SQB007872 | 3'UTR | 7167 | 7223 | 0 | 0 | 57 | |
| SQB007873 | 3A (P3-A) | 4914 | 5168 | 0 | 0 | 255 | |
| SQB007874 | 3B (VPg) | 5169 | 5237 | 0 | 0 | 69 | |
| SQB007875 | 3D | 5784 | 7163 | 0 | 0 | 1380 | |
| SQB007876 | 5'UTR | 1 | 632 | 0 | 0 | 632 | |
| SQB007877 | CDS | 633 | 7166 | 0 | 0 | 6534 | |
| SQB007878 | protease 3C | 5238 | 5783 | 0 | 0 | 546 | |
| SQB007879 | VP4/2 | 633 | 1069 | 0 | 0 | 437 | |
| SQB007880 | genome | 1 | 7223 | 0 | 0 | 7223 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB000612 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB000613 | 3D | 1718 | 2177 | 0 | 0 | 460 | |
| SPB000614 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB000615 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB000616 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB000617 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB000618 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB000619 | 1D (VP1) | 566 | 853 | 0 | 0 | 288 | |
| SPB000620 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPB000621 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPB000622 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB000623 | CDS | 1 | 2177 | 0 | 0 | 2177 | |
| SPB000624 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |