| RVdb StrainID | BNZ01321 | GenBank Accession | JF781501.1 |
| Species | RVB | Sequence Length | 6882 nt |
| Serotype | 101 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus B strain HRV-B35_p1135_sR738_2007 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B35_p1135_sR738_2007 | Sampling Date | 2007-01-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB007706 | 1A (VP4) | 431 | 637 | 0 | 0 | 207 | |
| SQB007707 | 1B (VP2) | 638 | 1435 | 0 | 0 | 798 | |
| SQB007708 | 1C (VP3) | 1436 | 2143 | 0 | 0 | 708 | |
| SQB007709 | 1D (VP1) | 2144 | 3007 | 0 | 0 | 864 | |
| SQB007710 | 2A (P2-A) | 3008 | 3445 | 0 | 0 | 438 | |
| SQB007711 | 2B (P2-B) | 3446 | 3736 | 0 | 0 | 291 | |
| SQB007712 | 2C (P2-C) | 3737 | 4726 | 0 | 0 | 990 | |
| SQB007713 | 3A (P3-A) | 4727 | 4981 | 0 | 0 | 255 | |
| SQB007714 | 3B (VPg) | 4982 | 5050 | 0 | 0 | 69 | |
| SQB007715 | 3D | 5597 | 6882 | 0 | 1 | 1286 | |
| SQB007716 | 5'UTR | 1 | 430 | 1 | 0 | 430 | |
| SQB007717 | CDS | 431 | 6882 | 0 | 1 | 6452 | |
| SQB007718 | protease 3C | 5051 | 5596 | 0 | 0 | 546 | |
| SQB007719 | VP4/2 | 431 | 867 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001149 | protease 3C | 1541 | 1722 | 0 | 0 | 182 | |
| SPB001150 | 3D | 1723 | 2151 | 0 | 1 | 429 | |
| SPB001151 | 3B (VPg) | 1518 | 1540 | 0 | 0 | 23 | |
| SPB001152 | 3A (P3-A) | 1433 | 1517 | 0 | 0 | 85 | |
| SPB001153 | 2C (P2-C) | 1103 | 1432 | 0 | 0 | 330 | |
| SPB001154 | 2B (P2-B) | 1006 | 1102 | 0 | 0 | 97 | |
| SPB001155 | 2A (P2-A) | 860 | 1005 | 0 | 0 | 146 | |
| SPB001156 | 1D (VP1) | 572 | 859 | 0 | 0 | 288 | |
| SPB001157 | 1C (VP3) | 336 | 571 | 0 | 0 | 236 | |
| SPB001158 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPB001159 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001160 | CDS | 1 | 2151 | 0 | 0 | 2151 | |
| SPB001161 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |