| RVdb StrainID | BNZ01311 | GenBank Accession | JN614996.1 |
| Species | RVB | Sequence Length | 6899 nt |
| Serotype | 103 Checked by RVdb | Serotype (GenBank) | 103 |
| Definition | Rhinovirus B103 strain HRV-B06_p1160_sR1153_2009 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B06_p1160_sR1153_2009 | Sampling Date | 2009-09-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 2777139 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB007678 | 1A (VP4) | 342 | 548 | 0 | 0 | 207 | |
| SQB007679 | 1B (VP2) | 549 | 1334 | 0 | 0 | 786 | |
| SQB007680 | 1C (VP3) | 1335 | 2042 | 0 | 0 | 708 | |
| SQB007681 | 1D (VP1) | 2043 | 2906 | 0 | 0 | 864 | |
| SQB007682 | 2A (P2-A) | 2907 | 3344 | 0 | 0 | 438 | |
| SQB007683 | 2B (P2-B) | 3345 | 3635 | 0 | 0 | 291 | |
| SQB007684 | 2C (P2-C) | 3636 | 4625 | 0 | 0 | 990 | |
| SQB007685 | 3A (P3-A) | 4626 | 4880 | 0 | 0 | 255 | |
| SQB007686 | 3B (VPg) | 4881 | 4949 | 0 | 0 | 69 | |
| SQB007687 | 3D | 5496 | 6875 | 0 | 0 | 1380 | |
| SQB007688 | 5'UTR | 1 | 341 | 1 | 0 | 341 | |
| SQB007689 | CDS | 342 | 6878 | 0 | 0 | 6537 | |
| SQB007690 | protease 3C | 4950 | 5495 | 0 | 0 | 546 | |
| SQB007691 | VP4/2 | 342 | 778 | 0 | 0 | 437 | |
| SQB007692 | genome | 1 | 6899 | 1 | 1 | 6899 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001240 | protease 3C | 1537 | 1718 | 0 | 0 | 182 | |
| SPB001241 | 3D | 1719 | 2178 | 0 | 0 | 460 | |
| SPB001242 | 3B (VPg) | 1514 | 1536 | 0 | 0 | 23 | |
| SPB001243 | 3A (P3-A) | 1429 | 1513 | 0 | 0 | 85 | |
| SPB001244 | 2C (P2-C) | 1099 | 1428 | 0 | 0 | 330 | |
| SPB001245 | 2B (P2-B) | 1002 | 1098 | 0 | 0 | 97 | |
| SPB001246 | 2A (P2-A) | 856 | 1001 | 0 | 0 | 146 | |
| SPB001247 | 1D (VP1) | 568 | 855 | 0 | 0 | 288 | |
| SPB001248 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001249 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001250 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001251 | CDS | 1 | 2178 | 0 | 0 | 2178 | |
| SPB001252 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |