| RVdb StrainID | BNZ00001 | GenBank Accession | ON989194.1 |
| Species | RVB | Sequence Length | 6080 nt |
| Serotype | 79 Checked by RVdb | Serotype (GenBank) | 79 |
| Definition | Rhinovirus B strain RV-B79-USA-Dec-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-B79-USA-Dec-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | individual with influenza-like illness | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB006450 | 1B (VP2) | 1 | 758 | 1 | 0 | 758 | |
| SQB006451 | 1C (VP3) | 771 | 1479 | 0 | 0 | 709 | |
| SQB006452 | 1D (VP1) | 1480 | 2342 | 0 | 0 | 863 | |
| SQB006453 | 2A (P2-A) | 2343 | 2780 | 0 | 0 | 438 | |
| SQB006454 | 2B (P2-B) | 2781 | 3071 | 0 | 0 | 291 | |
| SQB006455 | 2C (P2-C) | 3072 | 4061 | 0 | 0 | 990 | |
| SQB006456 | 3A (P3-A) | 4062 | 4316 | 0 | 0 | 255 | |
| SQB006457 | 3B (VPg) | 4317 | 4385 | 0 | 0 | 69 | |
| SQB006458 | 3D | 4932 | 6080 | 0 | 1 | 1149 | |
| SQB006459 | CDS | 1 | 6080 | 1 | 1 | 6080 | |
| SQB006460 | protease 3C | 4386 | 4931 | 0 | 0 | 546 | |
| SQB006461 | VP4/2 | 1 | 202 | 1 | 0 | 202 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB006733 | protease 3C | 1462 | 1643 | 0 | 0 | 182 | |
| SPB006734 | 3D | 1644 | 2026 | 0 | 1 | 383 | |
| SPB006735 | 3B (VPg) | 1439 | 1461 | 0 | 0 | 23 | |
| SPB006736 | 3A (P3-A) | 1354 | 1438 | 0 | 0 | 85 | |
| SPB006737 | 2C (P2-C) | 1024 | 1353 | 0 | 0 | 330 | |
| SPB006738 | 2B (P2-B) | 927 | 1023 | 0 | 0 | 97 | |
| SPB006739 | 2A (P2-A) | 781 | 926 | 0 | 0 | 146 | |
| SPB006740 | 1D (VP1) | 493 | 780 | 0 | 0 | 288 | |
| SPB006741 | 1C (VP3) | 257 | 492 | 0 | 0 | 236 | |
| SPB006742 | 1B (VP2) | 1 | 256 | 1 | 0 | 256 | |
| SPB006743 | CDS | 1 | 2026 | 0 | 0 | 2026 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |