| RVdb StrainID | BNS01323 | GenBank Accession | JF781499.1 |
| Species | RVB | Sequence Length | 6888 nt |
| Serotype | 84 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus B strain HRV-B84_p1095_sR574_2008 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B84_p1095_sR574_2008 | Sampling Date | 2008-09-20 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB006070 | 1A (VP4) | 312 | 518 | 0 | 0 | 207 | |
| SQB006071 | 1B (VP2) | 519 | 1301 | 0 | 0 | 783 | |
| SQB006072 | 1C (VP3) | 1302 | 2009 | 0 | 0 | 708 | |
| SQB006073 | 1D (VP1) | 2010 | 2870 | 0 | 0 | 861 | |
| SQB006074 | 2A (P2-A) | 2871 | 3311 | 0 | 0 | 441 | |
| SQB006075 | 2B (P2-B) | 3312 | 3602 | 0 | 0 | 291 | |
| SQB006076 | 2C (P2-C) | 3603 | 4592 | 0 | 0 | 990 | |
| SQB006077 | 3'UTR | 6846 | 6888 | 0 | 1 | 43 | |
| SQB006078 | 3A (P3-A) | 4593 | 4847 | 0 | 0 | 255 | |
| SQB006079 | 3B (VPg) | 4848 | 4916 | 0 | 0 | 69 | |
| SQB006080 | 3D | 5463 | 6842 | 0 | 0 | 1380 | |
| SQB006081 | 5'UTR | 1 | 311 | 1 | 0 | 311 | |
| SQB006082 | CDS | 312 | 6845 | 0 | 0 | 6534 | |
| SQB006083 | protease 3C | 4917 | 5462 | 0 | 0 | 546 | |
| SQB006084 | VP4/2 | 312 | 748 | 0 | 0 | 437 | |
| SQB006085 | genome | 1 | 6888 | 1 | 1 | 6888 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001069 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB001070 | 3D | 1718 | 2177 | 0 | 0 | 460 | |
| SPB001071 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB001072 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB001073 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB001074 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001075 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001076 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPB001077 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPB001078 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPB001079 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001080 | CDS | 1 | 2177 | 0 | 0 | 2177 | |
| SPB001081 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |