| RVdb StrainID | BNS01318 | GenBank Accession | JF781507.1 |
| Species | RVB | Sequence Length | 7061 nt |
| Serotype | 42 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus B strain HRV-B42_p003_sT0041_2006 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B42_p003_sT0041_2006 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB006054 | 1A (VP4) | 486 | 692 | 0 | 0 | 207 | |
| SQB006055 | 1B (VP2) | 693 | 1472 | 0 | 0 | 780 | |
| SQB006056 | 1C (VP3) | 1473 | 2180 | 0 | 0 | 708 | |
| SQB006057 | 1D (VP1) | 2181 | 3044 | 0 | 0 | 864 | |
| SQB006058 | 2A (P2-A) | 3045 | 3485 | 0 | 0 | 441 | |
| SQB006059 | 2B (P2-B) | 3486 | 3776 | 0 | 0 | 291 | |
| SQB006060 | 2C (P2-C) | 3777 | 4769 | 0 | 0 | 993 | |
| SQB006061 | 3'UTR | 7017 | 7061 | 0 | 1 | 45 | |
| SQB006062 | 3A (P3-A) | 4770 | 5024 | 0 | 0 | 255 | |
| SQB006063 | 3B (VPg) | 5025 | 5093 | 0 | 0 | 69 | |
| SQB006064 | 3D | 5634 | 7013 | 0 | 0 | 1380 | |
| SQB006065 | 5'UTR | 1 | 485 | 1 | 0 | 485 | |
| SQB006066 | CDS | 486 | 7016 | 0 | 0 | 6531 | |
| SQB006067 | protease 3C | 5094 | 5633 | 0 | 0 | 540 | |
| SQB006068 | VP4/2 | 486 | 922 | 0 | 0 | 437 | |
| SQB006069 | genome | 1 | 7061 | 1 | 1 | 7061 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001121 | protease 3C | 1537 | 1716 | 0 | 0 | 180 | |
| SPB001122 | 3D | 1717 | 2176 | 0 | 0 | 460 | |
| SPB001123 | 3B (VPg) | 1514 | 1536 | 0 | 0 | 23 | |
| SPB001124 | 3A (P3-A) | 1429 | 1513 | 0 | 0 | 85 | |
| SPB001125 | 2C (P2-C) | 1098 | 1428 | 0 | 0 | 331 | |
| SPB001126 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001127 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001128 | 1D (VP1) | 566 | 853 | 0 | 0 | 288 | |
| SPB001129 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPB001130 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPB001131 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001132 | CDS | 1 | 2176 | 0 | 0 | 2176 | |
| SPB001133 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |