| RVdb StrainID | BNS01313 | GenBank Accession | JN562726.1 |
| Species | RVB | Sequence Length | 6913 nt |
| Serotype | 72 Checked by RVdb | Serotype (GenBank) | 72 |
| Definition | Human rhinovirus B strain HRV-B72_p1288_sT458_2007 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B72_p1288_sT458_2007 | Sampling Date | 2007 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB006039 | 1A (VP4) | 348 | 554 | 0 | 0 | 207 | |
| SQB006040 | 1B (VP2) | 555 | 1340 | 0 | 0 | 786 | |
| SQB006041 | 1C (VP3) | 1341 | 2048 | 0 | 0 | 708 | |
| SQB006042 | 1D (VP1) | 2049 | 2915 | 0 | 0 | 867 | |
| SQB006043 | 2A (P2-A) | 2916 | 3353 | 0 | 0 | 438 | |
| SQB006044 | 2B (P2-B) | 3354 | 3644 | 0 | 0 | 291 | |
| SQB006045 | 2C (P2-C) | 3645 | 4634 | 0 | 0 | 990 | |
| SQB006046 | 3A (P3-A) | 4635 | 4892 | 0 | 0 | 258 | |
| SQB006047 | 3B (VPg) | 4893 | 4961 | 0 | 0 | 69 | |
| SQB006048 | 3D | 5508 | 6887 | 0 | 0 | 1380 | |
| SQB006049 | 5'UTR | 1 | 347 | 1 | 0 | 347 | |
| SQB006050 | CDS | 348 | 6890 | 0 | 0 | 6543 | |
| SQB006051 | protease 3C | 4962 | 5507 | 0 | 0 | 546 | |
| SQB006052 | VP4/2 | 348 | 784 | 0 | 0 | 437 | |
| SQB006053 | genome | 1 | 6913 | 1 | 1 | 6913 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001214 | protease 3C | 1539 | 1720 | 0 | 0 | 182 | |
| SPB001215 | 3D | 1721 | 2180 | 0 | 0 | 460 | |
| SPB001216 | 3B (VPg) | 1516 | 1538 | 0 | 0 | 23 | |
| SPB001217 | 3A (P3-A) | 1430 | 1515 | 0 | 0 | 86 | |
| SPB001218 | 2C (P2-C) | 1100 | 1429 | 0 | 0 | 330 | |
| SPB001219 | 2B (P2-B) | 1003 | 1099 | 0 | 0 | 97 | |
| SPB001220 | 2A (P2-A) | 857 | 1002 | 0 | 0 | 146 | |
| SPB001221 | 1D (VP1) | 568 | 856 | 0 | 0 | 289 | |
| SPB001222 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001223 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001224 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001225 | CDS | 1 | 2180 | 0 | 0 | 2180 | |
| SPB001226 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |