| RVdb StrainID | BNS01303 | GenBank Accession | JN798572.1 |
| Species | RVB | Sequence Length | 6922 nt |
| Serotype | 103 Corrected by RVdb | Serotype (GenBank) | 6 |
| Definition | Human rhinovirus B strain HRV-B06_p1185_sR2099_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B06_p1185_sR2099_2009 | Sampling Date | 2009-09-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB006022 | 1A (VP4) | 478 | 684 | 0 | 0 | 207 | |
| SQB006023 | 1B (VP2) | 685 | 1470 | 0 | 0 | 786 | |
| SQB006024 | 1C (VP3) | 1471 | 2178 | 0 | 0 | 708 | |
| SQB006025 | 1D (VP1) | 2179 | 3042 | 0 | 0 | 864 | |
| SQB006026 | 2A (P2-A) | 3043 | 3480 | 0 | 0 | 438 | |
| SQB006027 | 2B (P2-B) | 3481 | 3771 | 0 | 0 | 291 | |
| SQB006028 | 2C (P2-C) | 3772 | 4761 | 0 | 0 | 990 | |
| SQB006029 | 3A (P3-A) | 4762 | 5016 | 0 | 0 | 255 | |
| SQB006030 | 3B (VPg) | 5017 | 5085 | 0 | 0 | 69 | |
| SQB006031 | 3D | 5632 | 6922 | 0 | 1 | 1291 | |
| SQB006032 | 5'UTR | 1 | 477 | 1 | 0 | 477 | |
| SQB006033 | CDS | 478 | 6922 | 0 | 1 | 6445 | |
| SQB006034 | protease 3C | 5086 | 5631 | 0 | 0 | 546 | |
| SQB006035 | VP4/2 | 478 | 914 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001266 | protease 3C | 1537 | 1718 | 0 | 0 | 182 | |
| SPB001267 | 3D | 1719 | 2148 | 0 | 1 | 430 | |
| SPB001268 | 3B (VPg) | 1514 | 1536 | 0 | 0 | 23 | |
| SPB001269 | 3A (P3-A) | 1429 | 1513 | 0 | 0 | 85 | |
| SPB001270 | 2C (P2-C) | 1099 | 1428 | 0 | 0 | 330 | |
| SPB001271 | 2B (P2-B) | 1002 | 1098 | 0 | 0 | 97 | |
| SPB001272 | 2A (P2-A) | 856 | 1001 | 0 | 0 | 146 | |
| SPB001273 | 1D (VP1) | 568 | 855 | 0 | 0 | 288 | |
| SPB001274 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001275 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001276 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001277 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPB001278 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |