| RVdb StrainID | BNS01298 | GenBank Accession | JN990698.1 |
| Species | RVB | Sequence Length | 7009 nt |
| Serotype | 48 Checked by RVdb | Serotype (GenBank) | 48 |
| Definition | Human rhinovirus B strain HRV-B48_p1089_sR502_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B48_p1089_sR502_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB006008 | 1A (VP4) | 460 | 666 | 0 | 0 | 207 | |
| SQB006009 | 1B (VP2) | 667 | 1452 | 0 | 0 | 786 | |
| SQB006010 | 1C (VP3) | 1453 | 2160 | 0 | 0 | 708 | |
| SQB006011 | 1D (VP1) | 2161 | 3042 | 0 | 0 | 882 | |
| SQB006012 | 2A (P2-A) | 3043 | 3480 | 0 | 0 | 438 | |
| SQB006013 | 2B (P2-B) | 3481 | 3771 | 0 | 0 | 291 | |
| SQB006014 | 2C (P2-C) | 3772 | 4761 | 0 | 0 | 990 | |
| SQB006015 | 3A (P3-A) | 4762 | 5016 | 0 | 0 | 255 | |
| SQB006016 | 3B (VPg) | 5017 | 5085 | 0 | 0 | 69 | |
| SQB006017 | 3D | 5632 | 7009 | 0 | 1 | 1378 | |
| SQB006018 | 5'UTR | 1 | 459 | 1 | 0 | 459 | |
| SQB006019 | CDS | 460 | 7009 | 0 | 1 | 6550 | |
| SQB006020 | protease 3C | 5086 | 5631 | 0 | 0 | 546 | |
| SQB006021 | VP4/2 | 460 | 896 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001342 | protease 3C | 1543 | 1724 | 0 | 0 | 182 | |
| SPB001343 | 3D | 1725 | 2183 | 0 | 1 | 459 | |
| SPB001344 | 3B (VPg) | 1520 | 1542 | 0 | 0 | 23 | |
| SPB001345 | 3A (P3-A) | 1435 | 1519 | 0 | 0 | 85 | |
| SPB001346 | 2C (P2-C) | 1105 | 1434 | 0 | 0 | 330 | |
| SPB001347 | 2B (P2-B) | 1008 | 1104 | 0 | 0 | 97 | |
| SPB001348 | 2A (P2-A) | 862 | 1007 | 0 | 0 | 146 | |
| SPB001349 | 1D (VP1) | 568 | 861 | 0 | 0 | 294 | |
| SPB001350 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001351 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001352 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001353 | CDS | 1 | 2183 | 0 | 0 | 2183 | |
| SPB001354 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |