| RVdb StrainID | BNS00003 | GenBank Accession | ON989187.1 |
| Species | RVB | Sequence Length | 5320 nt |
| Serotype | 6 Checked by RVdb | Serotype (GenBank) | 6 |
| Definition | Rhinovirus B strain RV-B6-USA-Dec-2020-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-B6-USA-Dec-2020-Tempe-AZ | Sampling Date | 2020 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004791 | 1A (VP4) | 89 | 295 | 0 | 0 | 207 | |
| SQB004792 | 1B (VP2) | 296 | 1081 | 0 | 0 | 786 | |
| SQB004793 | 1C (VP3) | 1082 | 1789 | 0 | 0 | 708 | |
| SQB004794 | 1D (VP1) | 1790 | 2659 | 0 | 0 | 870 | |
| SQB004795 | 2A (P2-A) | 2660 | 3097 | 0 | 0 | 438 | |
| SQB004796 | 2B (P2-B) | 3098 | 3388 | 0 | 0 | 291 | |
| SQB004797 | 2C (P2-C) | 3389 | 4378 | 0 | 0 | 990 | |
| SQB004798 | 3A (P3-A) | 4379 | 4633 | 0 | 0 | 255 | |
| SQB004799 | 3B (VPg) | 4634 | 4702 | 0 | 0 | 69 | |
| SQB004800 | CDS | 89 | 5320 | 0 | 1 | 5232 | |
| SQB004801 | protease 3C | 4703 | 5248 | 0 | 0 | 546 | |
| SQB004802 | VP4/2 | 89 | 525 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB006708 | protease 3C | 1539 | 1720 | 0 | 0 | 182 | |
| SPB006709 | 3B (VPg) | 1516 | 1538 | 0 | 0 | 23 | |
| SPB006710 | 3A (P3-A) | 1431 | 1515 | 0 | 0 | 85 | |
| SPB006711 | 2C (P2-C) | 1101 | 1430 | 0 | 0 | 330 | |
| SPB006712 | 2B (P2-B) | 1004 | 1100 | 0 | 0 | 97 | |
| SPB006713 | 2A (P2-A) | 858 | 1003 | 0 | 0 | 146 | |
| SPB006714 | 1D (VP1) | 568 | 857 | 0 | 0 | 290 | |
| SPB006715 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB006716 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB006717 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB006718 | CDS | 1 | 1744 | 0 | 1 | 1744 | |
| SPB006719 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |