| RVdb StrainID | BNP01377 | GenBank Accession | JF285309.1 |
| Species | RVB | Sequence Length | 7019 nt |
| Serotype | 27 Checked by RVdb | Serotype (GenBank) | 27 |
| Definition | Human rhinovirus B isolate A46_LRT-6.7m polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | A46_LRT-6.7m | Sampling Date | 2004-07-06 |
| Sampling Country | Switzerland | Sampling location | Geneva |
| Isolation Source | bronchoalveolar lavage | NCBI Taxon ID | 147712 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004452 | 1A (VP4) | 462 | 668 | 0 | 0 | 207 | |
| SQB004453 | 1B (VP2) | 669 | 1454 | 0 | 0 | 786 | |
| SQB004454 | 1C (VP3) | 1455 | 2162 | 0 | 0 | 708 | |
| SQB004455 | 1D (VP1) | 2163 | 3023 | 0 | 0 | 861 | |
| SQB004456 | 2A (P2-A) | 3024 | 3464 | 0 | 0 | 441 | |
| SQB004457 | 2B (P2-B) | 3465 | 3755 | 0 | 0 | 291 | |
| SQB004458 | 2C (P2-C) | 3756 | 4745 | 0 | 0 | 990 | |
| SQB004459 | 3A (P3-A) | 4746 | 5000 | 0 | 0 | 255 | |
| SQB004460 | 3B (VPg) | 5001 | 5069 | 0 | 0 | 69 | |
| SQB004461 | 3D | 5616 | 6995 | 0 | 0 | 1380 | |
| SQB004462 | 5'UTR | 1 | 461 | 1 | 0 | 461 | |
| SQB004463 | CDS | 462 | 6998 | 0 | 0 | 6537 | |
| SQB004464 | protease 3C | 5070 | 5615 | 0 | 0 | 546 | |
| SQB004465 | VP4/2 | 462 | 898 | 0 | 0 | 437 | |
| SQB004466 | genome | 1 | 7019 | 1 | 1 | 7019 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB000992 | protease 3C | 1537 | 1718 | 0 | 0 | 182 | |
| SPB000993 | 3D | 1719 | 2178 | 0 | 0 | 460 | |
| SPB000994 | 3B (VPg) | 1514 | 1536 | 0 | 0 | 23 | |
| SPB000995 | 3A (P3-A) | 1429 | 1513 | 0 | 0 | 85 | |
| SPB000996 | 2C (P2-C) | 1099 | 1428 | 0 | 0 | 330 | |
| SPB000997 | 2B (P2-B) | 1002 | 1098 | 0 | 0 | 97 | |
| SPB000998 | 2A (P2-A) | 857 | 1001 | 0 | 0 | 145 | |
| SPB000999 | 1D (VP1) | 568 | 856 | 0 | 0 | 289 | |
| SPB001000 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001001 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001002 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001003 | CDS | 1 | 2178 | 0 | 0 | 2178 | |
| SPB001004 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 21713005 | Rhinovirus genome variation during chronic upper and lower respiratory tract infections. | 2011 | PLoS One | View More |