| RVdb StrainID | BNP01317 | GenBank Accession | JN541271.1 |
| Species | RVB | Sequence Length | 6808 nt |
| Serotype | 84 Checked by RVdb | Serotype (GenBank) | 84 |
| Definition | Human rhinovirus B strain HRV-B84_p1115_sR935_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B84_p1115_sR935_2008 | Sampling Date | 2008-04-10 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004396 | 1A (VP4) | 424 | 630 | 0 | 0 | 207 | |
| SQB004397 | 1B (VP2) | 631 | 1413 | 0 | 0 | 783 | |
| SQB004398 | 1C (VP3) | 1414 | 2121 | 0 | 0 | 708 | |
| SQB004399 | 1D (VP1) | 2122 | 2982 | 0 | 0 | 861 | |
| SQB004400 | 2A (P2-A) | 2983 | 3423 | 0 | 0 | 441 | |
| SQB004401 | 2B (P2-B) | 3424 | 3714 | 0 | 0 | 291 | |
| SQB004402 | 2C (P2-C) | 3715 | 4704 | 0 | 0 | 990 | |
| SQB004403 | 3A (P3-A) | 4705 | 4959 | 0 | 0 | 255 | |
| SQB004404 | 3B (VPg) | 4960 | 5028 | 0 | 0 | 69 | |
| SQB004405 | 3D | 5575 | 6808 | 0 | 1 | 1234 | |
| SQB004406 | 5'UTR | 1 | 423 | 1 | 0 | 423 | |
| SQB004407 | CDS | 424 | 6808 | 0 | 1 | 6385 | |
| SQB004408 | protease 3C | 5029 | 5574 | 0 | 0 | 546 | |
| SQB004409 | VP4/2 | 424 | 860 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001162 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB001163 | 3D | 1718 | 2128 | 0 | 1 | 411 | |
| SPB001164 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB001165 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB001166 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB001167 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001168 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001169 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPB001170 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPB001171 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPB001172 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001173 | CDS | 1 | 2128 | 0 | 0 | 2128 | |
| SPB001174 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |