| RVdb StrainID | BNP01302 | GenBank Accession | JN798573.1 |
| Species | RVB | Sequence Length | 6909 nt |
| Serotype | 4 Checked by RVdb | Serotype (GenBank) | 4 |
| Definition | Human rhinovirus B strain HRV-B04_p1202_sR3341_2010 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B04_p1202_sR3341_2010 | Sampling Date | 2010-04-17 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004363 | 1A (VP4) | 337 | 543 | 0 | 0 | 207 | |
| SQB004364 | 1B (VP2) | 544 | 1323 | 0 | 0 | 780 | |
| SQB004365 | 1C (VP3) | 1324 | 2031 | 0 | 0 | 708 | |
| SQB004366 | 1D (VP1) | 2032 | 2895 | 0 | 0 | 864 | |
| SQB004367 | 2A (P2-A) | 2896 | 3336 | 0 | 0 | 441 | |
| SQB004368 | 2B (P2-B) | 3337 | 3627 | 0 | 0 | 291 | |
| SQB004369 | 2C (P2-C) | 3628 | 4617 | 0 | 0 | 990 | |
| SQB004370 | 3'UTR | 6871 | 6909 | 0 | 1 | 39 | |
| SQB004371 | 3A (P3-A) | 4618 | 4872 | 0 | 0 | 255 | |
| SQB004372 | 3B (VPg) | 4873 | 4941 | 0 | 0 | 69 | |
| SQB004373 | 3D | 5488 | 6867 | 0 | 0 | 1380 | |
| SQB004374 | 5'UTR | 1 | 336 | 1 | 0 | 336 | |
| SQB004375 | CDS | 337 | 6870 | 0 | 0 | 6534 | |
| SQB004376 | protease 3C | 4942 | 5487 | 0 | 0 | 546 | |
| SQB004377 | VP4/2 | 337 | 773 | 0 | 0 | 437 | |
| SQB004378 | genome | 1 | 6909 | 1 | 1 | 6909 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001279 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB001280 | 3D | 1718 | 2177 | 0 | 0 | 460 | |
| SPB001281 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB001282 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB001283 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB001284 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001285 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001286 | 1D (VP1) | 566 | 853 | 0 | 0 | 288 | |
| SPB001287 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPB001288 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPB001289 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001290 | CDS | 1 | 2177 | 0 | 0 | 2177 | |
| SPB001291 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |