| RVdb StrainID | BNP01277 | GenBank Accession | JQ747748.1 |
| Species | RVB | Sequence Length | 6797 nt |
| Serotype | 6 Checked by RVdb | Serotype (GenBank) | 6 |
| Definition | Human rhinovirus B strain HRV-B06_p1104_s2980_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B06_p1104_s2980_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004319 | 1A (VP4) | 342 | 548 | 0 | 0 | 207 | |
| SQB004320 | 1B (VP2) | 549 | 1334 | 0 | 0 | 786 | |
| SQB004321 | 1C (VP3) | 1335 | 2042 | 0 | 0 | 708 | |
| SQB004322 | 1D (VP1) | 2043 | 2912 | 0 | 0 | 870 | |
| SQB004323 | 2A (P2-A) | 2913 | 3350 | 0 | 0 | 438 | |
| SQB004324 | 2B (P2-B) | 3351 | 3641 | 0 | 0 | 291 | |
| SQB004325 | 2C (P2-C) | 3642 | 4631 | 0 | 0 | 990 | |
| SQB004326 | 3A (P3-A) | 4632 | 4886 | 0 | 0 | 255 | |
| SQB004327 | 3B (VPg) | 4887 | 4955 | 0 | 0 | 69 | |
| SQB004328 | 3D | 5502 | 6797 | 0 | 1 | 1296 | |
| SQB004329 | 5'UTR | 1 | 341 | 1 | 0 | 341 | |
| SQB004330 | CDS | 342 | 6797 | 0 | 1 | 6456 | |
| SQB004331 | protease 3C | 4956 | 5501 | 0 | 0 | 546 | |
| SQB004332 | VP4/2 | 342 | 778 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001505 | protease 3C | 1539 | 1720 | 0 | 0 | 182 | |
| SPB001506 | 3D | 1721 | 2152 | 0 | 1 | 432 | |
| SPB001507 | 3B (VPg) | 1516 | 1538 | 0 | 0 | 23 | |
| SPB001508 | 3A (P3-A) | 1431 | 1515 | 0 | 0 | 85 | |
| SPB001509 | 2C (P2-C) | 1101 | 1430 | 0 | 0 | 330 | |
| SPB001510 | 2B (P2-B) | 1004 | 1100 | 0 | 0 | 97 | |
| SPB001511 | 2A (P2-A) | 858 | 1003 | 0 | 0 | 146 | |
| SPB001512 | 1D (VP1) | 568 | 857 | 0 | 0 | 290 | |
| SPB001513 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001514 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001515 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001516 | CDS | 1 | 2152 | 0 | 0 | 2152 | |
| SPB001517 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |