| RVdb StrainID | BNP00002 | GenBank Accession | ON989189.1 |
| Species | RVB | Sequence Length | 6375 nt |
| Serotype | 79 Checked by RVdb | Serotype (GenBank) | 79 |
| Definition | Rhinovirus B strain RV-B79-USA-Feb-2021-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-B79-USA-Feb-2021-Tempe-AZ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB003119 | 1A (VP4) | 61 | 267 | 0 | 0 | 207 | |
| SQB003120 | 1B (VP2) | 268 | 1065 | 0 | 0 | 798 | |
| SQB003121 | 1C (VP3) | 1066 | 1774 | 0 | 0 | 709 | |
| SQB003122 | 1D (VP1) | 1775 | 2637 | 0 | 0 | 863 | |
| SQB003123 | 2A (P2-A) | 2638 | 3075 | 0 | 0 | 438 | |
| SQB003124 | 2B (P2-B) | 3076 | 3366 | 0 | 0 | 291 | |
| SQB003125 | 2C (P2-C) | 3367 | 4356 | 0 | 0 | 990 | |
| SQB003126 | 3A (P3-A) | 4357 | 4611 | 0 | 0 | 255 | |
| SQB003127 | 3B (VPg) | 4612 | 4680 | 0 | 0 | 69 | |
| SQB003128 | 3D | 5227 | 6375 | 0 | 1 | 1149 | |
| SQB003129 | CDS | 61 | 6375 | 0 | 1 | 6315 | |
| SQB003130 | protease 3C | 4681 | 5226 | 0 | 0 | 546 | |
| SQB003131 | VP4/2 | 61 | 497 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB006720 | protease 3C | 1541 | 1722 | 0 | 0 | 182 | |
| SPB006721 | 3D | 1723 | 2105 | 0 | 1 | 383 | |
| SPB006722 | 3B (VPg) | 1518 | 1540 | 0 | 0 | 23 | |
| SPB006723 | 3A (P3-A) | 1433 | 1517 | 0 | 0 | 85 | |
| SPB006724 | 2C (P2-C) | 1103 | 1432 | 0 | 0 | 330 | |
| SPB006725 | 2B (P2-B) | 1006 | 1102 | 0 | 0 | 97 | |
| SPB006726 | 2A (P2-A) | 860 | 1005 | 0 | 0 | 146 | |
| SPB006727 | 1D (VP1) | 572 | 859 | 0 | 0 | 288 | |
| SPB006728 | 1C (VP3) | 336 | 571 | 0 | 0 | 236 | |
| SPB006729 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPB006730 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB006731 | CDS | 1 | 2105 | 0 | 0 | 2105 | |
| SPB006732 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |