| RVdb StrainID | BNM01320 | GenBank Accession | JF781502.1 |
| Species | RVB | Sequence Length | 6941 nt |
| Serotype | 84 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus B strain HRV-B84_p1098_sR861_2008 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B84_p1098_sR861_2008 | Sampling Date | 2008-12-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB002766 | 1A (VP4) | 404 | 610 | 0 | 0 | 207 | |
| SQB002767 | 1B (VP2) | 611 | 1393 | 0 | 0 | 783 | |
| SQB002768 | 1C (VP3) | 1394 | 2101 | 0 | 0 | 708 | |
| SQB002769 | 1D (VP1) | 2102 | 2962 | 0 | 0 | 861 | |
| SQB002770 | 2A (P2-A) | 2963 | 3403 | 0 | 0 | 441 | |
| SQB002771 | 2B (P2-B) | 3404 | 3694 | 0 | 0 | 291 | |
| SQB002772 | 2C (P2-C) | 3695 | 4684 | 0 | 0 | 990 | |
| SQB002773 | 3A (P3-A) | 4685 | 4939 | 0 | 0 | 255 | |
| SQB002774 | 3B (VPg) | 4940 | 5008 | 0 | 0 | 69 | |
| SQB002775 | 3D | 5555 | 6934 | 0 | 0 | 1380 | |
| SQB002776 | 5'UTR | 1 | 403 | 1 | 0 | 403 | |
| SQB002777 | CDS | 404 | 6937 | 0 | 0 | 6534 | |
| SQB002778 | protease 3C | 5009 | 5554 | 0 | 0 | 546 | |
| SQB002779 | VP4/2 | 404 | 840 | 0 | 0 | 437 | |
| SQB002780 | genome | 1 | 6941 | 1 | 1 | 6941 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001095 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB001096 | 3D | 1718 | 2177 | 0 | 0 | 460 | |
| SPB001097 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB001098 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB001099 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB001100 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001101 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001102 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPB001103 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPB001104 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPB001105 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001106 | CDS | 1 | 2177 | 0 | 0 | 2177 | |
| SPB001107 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |