| RVdb StrainID | BNM01300 | GenBank Accession | JN815239.1 |
| Species | RVB | Sequence Length | 7043 nt |
| Serotype | 103 Corrected by RVdb | Serotype (GenBank) | 6 |
| Definition | Human rhinovirus B strain HRV-B06_p1198_sR1308_2009 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B06_p1198_sR1308_2009 | Sampling Date | 2009-05-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB002718 | 1A (VP4) | 479 | 685 | 0 | 0 | 207 | |
| SQB002719 | 1B (VP2) | 686 | 1471 | 0 | 0 | 786 | |
| SQB002720 | 1C (VP3) | 1472 | 2179 | 0 | 0 | 708 | |
| SQB002721 | 1D (VP1) | 2180 | 3052 | 0 | 0 | 873 | |
| SQB002722 | 2A (P2-A) | 3053 | 3484 | 0 | 0 | 432 | |
| SQB002723 | 2B (P2-B) | 3485 | 3775 | 0 | 0 | 291 | |
| SQB002724 | 2C (P2-C) | 3776 | 4765 | 0 | 0 | 990 | |
| SQB002725 | 3A (P3-A) | 4766 | 5020 | 0 | 0 | 255 | |
| SQB002726 | 3B (VPg) | 5021 | 5089 | 0 | 0 | 69 | |
| SQB002727 | 3D | 5636 | 7015 | 0 | 0 | 1380 | |
| SQB002728 | 5'UTR | 1 | 478 | 1 | 0 | 478 | |
| SQB002729 | CDS | 479 | 7018 | 0 | 0 | 6540 | |
| SQB002730 | protease 3C | 5090 | 5635 | 0 | 0 | 546 | |
| SQB002731 | VP4/2 | 479 | 915 | 0 | 0 | 437 | |
| SQB002732 | genome | 1 | 7043 | 1 | 1 | 7043 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001305 | protease 3C | 1538 | 1719 | 0 | 0 | 182 | |
| SPB001306 | 3D | 1720 | 2179 | 0 | 0 | 460 | |
| SPB001307 | 3B (VPg) | 1515 | 1537 | 0 | 0 | 23 | |
| SPB001308 | 3A (P3-A) | 1430 | 1514 | 0 | 0 | 85 | |
| SPB001309 | 2C (P2-C) | 1100 | 1429 | 0 | 0 | 330 | |
| SPB001310 | 2B (P2-B) | 1003 | 1099 | 0 | 0 | 97 | |
| SPB001311 | 2A (P2-A) | 859 | 1002 | 0 | 0 | 144 | |
| SPB001312 | 1D (VP1) | 568 | 858 | 0 | 0 | 291 | |
| SPB001313 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001314 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001315 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001316 | CDS | 1 | 2179 | 0 | 0 | 2179 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |