RVdb StrainID BNC01374 GenBank Accession JF285331.1
Species RVB Sequence Length 7147 nt
Serotype Checked by RVdb Serotype (GenBank) 3
Definition Human rhinovirus B isolate V38_URT-2.5m polyprotein gene, complete cds GenBank Submission Date 2022-11-06
Strain Name V38_URT-2.5m Sampling Date 2004-12-30
Sampling Country Switzerland Sampling location Geneva
Isolation Source nasopharyngeal swab NCBI Taxon ID 147712
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQB001250 1A (VP4) 601 807 0 0 207
SQB001251 1B (VP2) 808 1593 0 0 786
SQB001252 1C (VP3) 1594 2302 0 0 709
SQB001253 1D (VP1) 2303 3165 0 0 863
SQB001254 2A (P2-A) 3166 3602 0 0 437
SQB001255 2B (P2-B) 3603 3894 0 0 292
SQB001256 2C (P2-C) 3895 4884 0 0 990
SQB001257 3A (P3-A) 4885 5139 0 0 255
SQB001258 3B (VPg) 5140 5208 0 0 69
SQB001259 3D 5755 7134 0 0 1380
SQB001260 5'UTR 1 600 1 0 600
SQB001261 CDS 601 7137 0 0 6537
SQB001262 protease 3C 5209 5754 0 0 546
SQB001263 VP4/2 601 1037 0 0 437
SQB001264 genome 1 7147 1 1 7147
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPB001031 protease 3C 1537 1718 0 0 182
SPB001032 3D 1719 2178 0 0 460
SPB001033 3B (VPg) 1514 1536 0 0 23
SPB001034 3A (P3-A) 1429 1513 0 0 85
SPB001035 2C (P2-C) 1099 1428 0 0 330
SPB001036 2B (P2-B) 1002 1098 0 0 97
SPB001037 2A (P2-A) 856 1001 0 0 146
SPB001038 1D (VP1) 568 855 0 0 288
SPB001039 1C (VP3) 332 567 0 0 236
SPB001040 1B (VP2) 70 331 0 0 262
SPB001041 1A (VP4) 1 69 0 0 69
SPB001042 CDS 1 2178 0 0 2178
SPB001043 VP4/2 1 145 0 0 145
PMID Title Publication Year Journal View in RVdb
21713005 Rhinovirus genome variation during chronic upper and lower respiratory tract infections. 2011 PLoS One View More