| RVdb StrainID | BNC01374 | GenBank Accession | JF285331.1 |
| Species | RVB | Sequence Length | 7147 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Human rhinovirus B isolate V38_URT-2.5m polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | V38_URT-2.5m | Sampling Date | 2004-12-30 |
| Sampling Country | Switzerland | Sampling location | Geneva |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 147712 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB001250 | 1A (VP4) | 601 | 807 | 0 | 0 | 207 | |
| SQB001251 | 1B (VP2) | 808 | 1593 | 0 | 0 | 786 | |
| SQB001252 | 1C (VP3) | 1594 | 2302 | 0 | 0 | 709 | |
| SQB001253 | 1D (VP1) | 2303 | 3165 | 0 | 0 | 863 | |
| SQB001254 | 2A (P2-A) | 3166 | 3602 | 0 | 0 | 437 | |
| SQB001255 | 2B (P2-B) | 3603 | 3894 | 0 | 0 | 292 | |
| SQB001256 | 2C (P2-C) | 3895 | 4884 | 0 | 0 | 990 | |
| SQB001257 | 3A (P3-A) | 4885 | 5139 | 0 | 0 | 255 | |
| SQB001258 | 3B (VPg) | 5140 | 5208 | 0 | 0 | 69 | |
| SQB001259 | 3D | 5755 | 7134 | 0 | 0 | 1380 | |
| SQB001260 | 5'UTR | 1 | 600 | 1 | 0 | 600 | |
| SQB001261 | CDS | 601 | 7137 | 0 | 0 | 6537 | |
| SQB001262 | protease 3C | 5209 | 5754 | 0 | 0 | 546 | |
| SQB001263 | VP4/2 | 601 | 1037 | 0 | 0 | 437 | |
| SQB001264 | genome | 1 | 7147 | 1 | 1 | 7147 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001031 | protease 3C | 1537 | 1718 | 0 | 0 | 182 | |
| SPB001032 | 3D | 1719 | 2178 | 0 | 0 | 460 | |
| SPB001033 | 3B (VPg) | 1514 | 1536 | 0 | 0 | 23 | |
| SPB001034 | 3A (P3-A) | 1429 | 1513 | 0 | 0 | 85 | |
| SPB001035 | 2C (P2-C) | 1099 | 1428 | 0 | 0 | 330 | |
| SPB001036 | 2B (P2-B) | 1002 | 1098 | 0 | 0 | 97 | |
| SPB001037 | 2A (P2-A) | 856 | 1001 | 0 | 0 | 146 | |
| SPB001038 | 1D (VP1) | 568 | 855 | 0 | 0 | 288 | |
| SPB001039 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001040 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001041 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001042 | CDS | 1 | 2178 | 0 | 0 | 2178 | |
| SPB001043 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 21713005 | Rhinovirus genome variation during chronic upper and lower respiratory tract infections. | 2011 | PLoS One | View More |