| RVdb StrainID | BNC01324 | GenBank Accession | JF781498.1 |
| Species | RVB | Sequence Length | 6891 nt |
| Serotype | 42 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus B strain HRV-B42_p001_sT0019_2006 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B42_p001_sT0019_2006 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB001211 | 1A (VP4) | 367 | 573 | 0 | 0 | 207 | |
| SQB001212 | 1B (VP2) | 574 | 1353 | 0 | 0 | 780 | |
| SQB001213 | 1C (VP3) | 1354 | 2061 | 0 | 0 | 708 | |
| SQB001214 | 1D (VP1) | 2062 | 2925 | 0 | 0 | 864 | |
| SQB001215 | 2A (P2-A) | 2926 | 3366 | 0 | 0 | 441 | |
| SQB001216 | 2B (P2-B) | 3367 | 3657 | 0 | 0 | 291 | |
| SQB001217 | 2C (P2-C) | 3658 | 4647 | 0 | 0 | 990 | |
| SQB001218 | 3A (P3-A) | 4648 | 4902 | 0 | 0 | 255 | |
| SQB001219 | 3B (VPg) | 4903 | 4971 | 0 | 0 | 69 | |
| SQB001220 | 3D | 5518 | 6891 | 0 | 1 | 1374 | |
| SQB001221 | 5'UTR | 1 | 366 | 1 | 0 | 366 | |
| SQB001222 | CDS | 367 | 6891 | 0 | 1 | 6525 | |
| SQB001223 | protease 3C | 4972 | 5517 | 0 | 0 | 546 | |
| SQB001224 | VP4/2 | 367 | 803 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001056 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB001057 | 3D | 1718 | 2175 | 0 | 1 | 458 | |
| SPB001058 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB001059 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB001060 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB001061 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001062 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001063 | 1D (VP1) | 566 | 853 | 0 | 0 | 288 | |
| SPB001064 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPB001065 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPB001066 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001067 | CDS | 1 | 2175 | 0 | 0 | 2175 | |
| SPB001068 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |