| RVdb StrainID | BNC01319 | GenBank Accession | JF781506.1 |
| Species | RVB | Sequence Length | 6895 nt |
| Serotype | 104 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus B strain HRV-B52_p045_s3039_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B52_p045_s3039_1999 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB001197 | 1A (VP4) | 377 | 583 | 0 | 0 | 207 | |
| SQB001198 | 1B (VP2) | 584 | 1369 | 0 | 0 | 786 | |
| SQB001199 | 1C (VP3) | 1370 | 2077 | 0 | 0 | 708 | |
| SQB001200 | 1D (VP1) | 2078 | 2962 | 0 | 0 | 885 | |
| SQB001201 | 2A (P2-A) | 2963 | 3400 | 0 | 0 | 438 | |
| SQB001202 | 2B (P2-B) | 3401 | 3691 | 0 | 0 | 291 | |
| SQB001203 | 2C (P2-C) | 3692 | 4681 | 0 | 0 | 990 | |
| SQB001204 | 3A (P3-A) | 4682 | 4936 | 0 | 0 | 255 | |
| SQB001205 | 3B (VPg) | 4937 | 5005 | 0 | 0 | 69 | |
| SQB001206 | 3D | 5552 | 6895 | 0 | 1 | 1344 | |
| SQB001207 | 5'UTR | 1 | 376 | 1 | 0 | 376 | |
| SQB001208 | CDS | 377 | 6895 | 0 | 1 | 6519 | |
| SQB001209 | protease 3C | 5006 | 5551 | 0 | 0 | 546 | |
| SQB001210 | VP4/2 | 377 | 813 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001108 | protease 3C | 1544 | 1725 | 0 | 0 | 182 | |
| SPB001109 | 3D | 1726 | 2173 | 0 | 1 | 448 | |
| SPB001110 | 3B (VPg) | 1521 | 1543 | 0 | 0 | 23 | |
| SPB001111 | 3A (P3-A) | 1436 | 1520 | 0 | 0 | 85 | |
| SPB001112 | 2C (P2-C) | 1106 | 1435 | 0 | 0 | 330 | |
| SPB001113 | 2B (P2-B) | 1009 | 1105 | 0 | 0 | 97 | |
| SPB001114 | 2A (P2-A) | 863 | 1008 | 0 | 0 | 146 | |
| SPB001115 | 1D (VP1) | 568 | 862 | 0 | 0 | 295 | |
| SPB001116 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001117 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001118 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001119 | CDS | 1 | 2173 | 0 | 0 | 2173 | |
| SPB001120 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |