| RVdb StrainID | BNC01314 | GenBank Accession | JN562724.1 |
| Species | RVB | Sequence Length | 7049 nt |
| Serotype | 42 Checked by RVdb | Serotype (GenBank) | 42 |
| Definition | Human rhinovirus B strain HRV-B42_p1011_sR2533_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B42_p1011_sR2533_2008 | Sampling Date | 2008-09-27 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB001183 | 1A (VP4) | 560 | 766 | 0 | 0 | 207 | |
| SQB001184 | 1B (VP2) | 767 | 1546 | 0 | 0 | 780 | |
| SQB001185 | 1C (VP3) | 1547 | 2254 | 0 | 0 | 708 | |
| SQB001186 | 1D (VP1) | 2255 | 3118 | 0 | 0 | 864 | |
| SQB001187 | 2A (P2-A) | 3119 | 3559 | 0 | 0 | 441 | |
| SQB001188 | 2B (P2-B) | 3560 | 3850 | 0 | 0 | 291 | |
| SQB001189 | 2C (P2-C) | 3851 | 4840 | 0 | 0 | 990 | |
| SQB001190 | 3A (P3-A) | 4841 | 5095 | 0 | 0 | 255 | |
| SQB001191 | 3B (VPg) | 5096 | 5164 | 0 | 0 | 69 | |
| SQB001192 | 3D | 5711 | 7049 | 0 | 1 | 1339 | |
| SQB001193 | 5'UTR | 1 | 559 | 1 | 0 | 559 | |
| SQB001194 | CDS | 560 | 7049 | 0 | 1 | 6490 | |
| SQB001195 | protease 3C | 5165 | 5710 | 0 | 0 | 546 | |
| SQB001196 | VP4/2 | 560 | 996 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001201 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB001202 | 3D | 1718 | 2163 | 0 | 1 | 446 | |
| SPB001203 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB001204 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB001205 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB001206 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB001207 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB001208 | 1D (VP1) | 566 | 853 | 0 | 0 | 288 | |
| SPB001209 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPB001210 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPB001211 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001212 | CDS | 1 | 2163 | 0 | 0 | 2163 | |
| SPB001213 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |