| RVdb StrainID | BNC01299 | GenBank Accession | JN815243.1 |
| Species | RVB | Sequence Length | 6653 nt |
| Serotype | 6 Checked by RVdb | Serotype (GenBank) | 6 |
| Definition | Human rhinovirus B strain HRV-B06_p1210_sR2128_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-B06_p1210_sR2128_2009 | Sampling Date | 2009-05-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB001153 | 1A (VP4) | 202 | 408 | 0 | 0 | 207 | |
| SQB001154 | 1B (VP2) | 409 | 1194 | 0 | 0 | 786 | |
| SQB001155 | 1C (VP3) | 1195 | 1902 | 0 | 0 | 708 | |
| SQB001156 | 1D (VP1) | 1903 | 2772 | 0 | 0 | 870 | |
| SQB001157 | 2A (P2-A) | 2773 | 3210 | 0 | 0 | 438 | |
| SQB001158 | 2B (P2-B) | 3211 | 3501 | 0 | 0 | 291 | |
| SQB001159 | 2C (P2-C) | 3502 | 4491 | 0 | 0 | 990 | |
| SQB001160 | 3A (P3-A) | 4492 | 4746 | 0 | 0 | 255 | |
| SQB001161 | 3B (VPg) | 4747 | 4815 | 0 | 0 | 69 | |
| SQB001162 | 3D | 5362 | 6653 | 0 | 1 | 1292 | |
| SQB001163 | CDS | 202 | 6653 | 0 | 1 | 6452 | |
| SQB001164 | protease 3C | 4816 | 5361 | 0 | 0 | 546 | |
| SQB001165 | VP4/2 | 202 | 638 | 0 | 0 | 437 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001317 | protease 3C | 1539 | 1720 | 0 | 0 | 182 | |
| SPB001318 | 3D | 1721 | 2151 | 0 | 1 | 431 | |
| SPB001319 | 3B (VPg) | 1516 | 1538 | 0 | 0 | 23 | |
| SPB001320 | 3A (P3-A) | 1431 | 1515 | 0 | 0 | 85 | |
| SPB001321 | 2C (P2-C) | 1101 | 1430 | 0 | 0 | 330 | |
| SPB001322 | 2B (P2-B) | 1004 | 1100 | 0 | 0 | 97 | |
| SPB001323 | 2A (P2-A) | 858 | 1003 | 0 | 0 | 146 | |
| SPB001324 | 1D (VP1) | 568 | 857 | 0 | 0 | 290 | |
| SPB001325 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001326 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001327 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001328 | CDS | 1 | 2151 | 0 | 0 | 2151 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675857 | Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |