RVdb StrainID ANZ07401 GenBank Accession JF285321.1
Species RVA Sequence Length 7093 nt
Serotype 64  Checked by RVdb Serotype (GenBank) 64
Definition Human rhinovirus A isolate P37_LRT_LCT-7.6m polyprotein gene, complete cds GenBank Submission Date 2014-01-31
Strain Name P37_LRT_LCT-7.6m Sampling Date 2001-09-10
Sampling Country Switzerland Sampling location Geneva
Isolation Source bronchoalveolar lavage NCBI Taxon ID 147711
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA037909 1A (VP4) 594 800 0 0 207
SQA037910 1B (VP2) 801 1583 0 0 783
SQA037911 1C (VP3) 1584 2294 0 0 711
SQA037912 1D (VP1) 2295 3161 0 0 867
SQA037913 2A (P2-A) 3162 3587 0 0 426
SQA037914 2B (P2-B) 3588 3872 0 0 285
SQA037915 2C (P2-C) 3873 4838 0 0 966
SQA037916 3'UTR 7065 7093 0 1 29
SQA037917 3A (P3-A) 4839 5069 0 0 231
SQA037918 3B (VPg) 5070 5132 0 0 63
SQA037919 protease 3C 5133 5681 0 0 549
SQA037920 3D 5682 7061 0 0 1380
SQA037921 5'UTR 1 593 1 0 593
SQA037922 CDS 594 7064 0 0 6471
SQA037923 VP4/2 594 1028 0 0 435
SQA037924 genome 1 7093 1 1 7093
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA002741 protease 3C 1514 1696 0 0 183
SPA002742 3D 1697 2156 0 0 460
SPA002743 3B (VPg) 1493 1513 0 0 21
SPA002744 3A (P3-A) 1416 1492 0 0 77
SPA002745 2C (P2-C) 1094 1415 0 0 322
SPA002746 2B (P2-B) 999 1093 0 0 95
SPA002747 2A (P2-A) 857 998 0 0 142
SPA002748 1D (VP1) 568 856 0 0 289
SPA002749 1C (VP3) 331 567 0 0 237
SPA002750 1B (VP2) 70 330 0 0 261
SPA002751 1A (VP4) 1 69 0 0 69
SPA002752 VP4/2 1 145 0 0 145
SPA002753 CDS 1 2156 0 0 2156
PMID Title Publication Year Journal View in RVdb
21713005 Rhinovirus genome variation during chronic upper and lower respiratory tract infections. 2011 PLoS One View More