RVdb StrainID ANZ07396 GenBank Accession JF285326.1
Species RVA Sequence Length 7043 nt
Serotype 24  Checked by RVdb Serotype (GenBank) 24
Definition Human rhinovirus A isolate R58_URT-7d polyprotein gene, partial cds GenBank Submission Date 2016-07-25
Strain Name R58_URT-7d Sampling Date 2004-01-20
Sampling Country Switzerland Sampling location Geneva
Isolation Source nasopharyngeal swab NCBI Taxon ID 147711
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA037895 1A (VP4) 607 813 0 0 207
SQA037896 1B (VP2) 814 1599 0 0 786
SQA037897 1C (VP3) 1600 2313 0 0 714
SQA037898 1D (VP1) 2314 3168 0 0 855
SQA037899 2A (P2-A) 3169 3594 0 0 426
SQA037900 2B (P2-B) 3595 3879 0 0 285
SQA037901 2C (P2-C) 3880 4845 0 0 966
SQA037902 3A (P3-A) 4846 5076 0 0 231
SQA037903 3B (VPg) 5077 5139 0 0 63
SQA037904 protease 3C 5140 5688 0 0 549
SQA037905 3D 5689 7043 0 1 1355
SQA037906 5'UTR 1 606 1 0 606
SQA037907 CDS 607 7043 0 1 6437
SQA037908 VP4/2 607 1041 0 0 435
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA002806 protease 3C 1512 1694 0 0 183
SPA002807 3D 1695 2142 0 0 448
SPA002808 3B (VPg) 1491 1511 0 0 21
SPA002809 3A (P3-A) 1414 1490 0 0 77
SPA002810 2C (P2-C) 1092 1413 0 0 322
SPA002811 2B (P2-B) 997 1091 0 0 95
SPA002812 2A (P2-A) 855 996 0 0 142
SPA002813 1D (VP1) 570 854 0 0 285
SPA002814 1C (VP3) 332 569 0 0 238
SPA002815 1B (VP2) 70 331 0 0 262
SPA002816 1A (VP4) 1 69 0 0 69
SPA002817 VP4/2 1 145 0 0 145
SPA002818 CDS 1 2146 0 0 2146
PMID Title Publication Year Journal View in RVdb
21713005 Rhinovirus genome variation during chronic upper and lower respiratory tract infections. 2011 PLoS One View More