| RVdb StrainID | ANZ07241 | GenBank Accession | JF781496.1 |
| Species | RVA | Sequence Length | 7058 nt |
| Serotype | 18 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A18_p036_s2916_1999_g1 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A18_p036_s2916_1999_g1 | Sampling Date | from 1999 to 2010 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037819 | 1A (VP4) | 549 | 755 | 0 | 0 | 207 | |
| SQA037820 | 1B (VP2) | 756 | 1532 | 0 | 0 | 777 | |
| SQA037821 | 1C (VP3) | 1533 | 2246 | 0 | 0 | 714 | |
| SQA037822 | 1D (VP1) | 2247 | 3107 | 0 | 0 | 861 | |
| SQA037823 | 2A (P2-A) | 3108 | 3533 | 0 | 0 | 426 | |
| SQA037824 | 2B (P2-B) | 3534 | 3818 | 0 | 0 | 285 | |
| SQA037825 | 2C (P2-C) | 3819 | 4784 | 0 | 0 | 966 | |
| SQA037826 | 3'UTR | 7011 | 7056 | 0 | 0 | 46 | |
| SQA037827 | 3A (P3-A) | 4785 | 5015 | 0 | 0 | 231 | |
| SQA037828 | 3B (VPg) | 5016 | 5078 | 0 | 0 | 63 | |
| SQA037829 | protease 3C | 5079 | 5627 | 0 | 0 | 549 | |
| SQA037830 | 3D | 5628 | 7007 | 0 | 0 | 1380 | |
| SQA037831 | 5'UTR | 1 | 548 | 1 | 0 | 548 | |
| SQA037832 | CDS | 549 | 7010 | 0 | 0 | 6462 | |
| SQA037833 | VP4/2 | 549 | 983 | 0 | 0 | 435 | |
| SQA037834 | genome | 1 | 7058 | 1 | 0 | 7058 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003037 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA003038 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA003039 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA003040 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA003041 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA003042 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA003043 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA003044 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPA003045 | 1C (VP3) | 329 | 566 | 0 | 0 | 238 | |
| SPA003046 | 1B (VP2) | 70 | 328 | 0 | 0 | 259 | |
| SPA003047 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003048 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003049 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |