| RVdb StrainID | ANZ07231 | GenBank Accession | JN541266.1 |
| Species | RVA | Sequence Length | 7043 nt |
| Serotype | 59 Checked by RVdb | Serotype (GenBank) | 59 |
| Definition | Human rhinovirus A strain HRV-A59_p1048_sR178_2008 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A59_p1048_sR178_2008 | Sampling Date | 2008-12-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037792 | 1A (VP4) | 571 | 777 | 0 | 0 | 207 | |
| SQA037793 | 1B (VP2) | 778 | 1572 | 0 | 0 | 795 | |
| SQA037794 | 1C (VP3) | 1573 | 2286 | 0 | 0 | 714 | |
| SQA037795 | 1D (VP1) | 2287 | 3144 | 0 | 0 | 858 | |
| SQA037796 | 2A (P2-A) | 3145 | 3570 | 0 | 0 | 426 | |
| SQA037797 | 2B (P2-B) | 3571 | 3855 | 0 | 0 | 285 | |
| SQA037798 | 2C (P2-C) | 3856 | 4821 | 0 | 0 | 966 | |
| SQA037799 | 3A (P3-A) | 4822 | 5052 | 0 | 0 | 231 | |
| SQA037800 | 3B (VPg) | 5053 | 5115 | 0 | 0 | 63 | |
| SQA037801 | protease 3C | 5116 | 5664 | 0 | 0 | 549 | |
| SQA037802 | 3D | 5665 | 7043 | 0 | 1 | 1379 | |
| SQA037803 | 5'UTR | 1 | 570 | 1 | 0 | 570 | |
| SQA037804 | CDS | 571 | 7043 | 0 | 1 | 6473 | |
| SQA037805 | VP4/2 | 571 | 1005 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003367 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA003368 | 3D | 1699 | 2157 | 0 | 1 | 459 | |
| SPA003369 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA003370 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA003371 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA003372 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003373 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA003374 | 1D (VP1) | 573 | 858 | 0 | 0 | 286 | |
| SPA003375 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA003376 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA003377 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003378 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003379 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |