| RVdb StrainID | ANZ07221 | GenBank Accession | JN614993.1 |
| Species | RVA | Sequence Length | 7034 nt |
| Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
| Definition | Human rhinovirus A strain HRV-A20_p1169_sR1200_2009 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A20_p1169_sR1200_2009 | Sampling Date | 2009-12-09 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037764 | 1A (VP4) | 533 | 739 | 0 | 0 | 207 | |
| SQA037765 | 1B (VP2) | 740 | 1525 | 0 | 0 | 786 | |
| SQA037766 | 1C (VP3) | 1526 | 2239 | 0 | 0 | 714 | |
| SQA037767 | 1D (VP1) | 2240 | 3130 | 0 | 0 | 891 | |
| SQA037768 | 2A (P2-A) | 3131 | 3559 | 0 | 0 | 429 | |
| SQA037769 | 2B (P2-B) | 3560 | 3844 | 0 | 0 | 285 | |
| SQA037770 | 2C (P2-C) | 3845 | 4807 | 0 | 0 | 963 | |
| SQA037771 | 3A (P3-A) | 4808 | 5041 | 0 | 0 | 234 | |
| SQA037772 | 3B (VPg) | 5042 | 5104 | 0 | 0 | 63 | |
| SQA037773 | protease 3C | 5105 | 5653 | 0 | 0 | 549 | |
| SQA037774 | 3D | 5654 | 7030 | 0 | 0 | 1377 | |
| SQA037775 | 5'UTR | 1 | 532 | 1 | 0 | 532 | |
| SQA037776 | CDS | 533 | 7033 | 0 | 0 | 6501 | |
| SQA037777 | VP4/2 | 533 | 967 | 0 | 0 | 435 | |
| SQA037778 | genome | 1 | 7034 | 1 | 1 | 7034 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003497 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
| SPA003498 | 3D | 1708 | 2166 | 0 | 0 | 459 | |
| SPA003499 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
| SPA003500 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
| SPA003501 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA003502 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA003503 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
| SPA003504 | 1D (VP1) | 570 | 866 | 0 | 0 | 297 | |
| SPA003505 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003506 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003507 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003508 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003509 | CDS | 1 | 2166 | 0 | 0 | 2166 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |