| RVdb StrainID | ANZ07216 | GenBank Accession | JN621244.1 |
| Species | RVA | Sequence Length | 6734 nt |
| Serotype | 23 Checked by RVdb | Serotype (GenBank) | 23 |
| Definition | Human rhinovirus A strain HRV-A23_p1005_sR1471_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A23_p1005_sR1471_2009 | Sampling Date | 2009-09-26 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037750 | 1A (VP4) | 572 | 778 | 0 | 0 | 207 | |
| SQA037751 | 1B (VP2) | 779 | 1561 | 0 | 0 | 783 | |
| SQA037752 | 1C (VP3) | 1562 | 2269 | 0 | 0 | 708 | |
| SQA037753 | 1D (VP1) | 2270 | 3118 | 0 | 0 | 849 | |
| SQA037754 | 2A (P2-A) | 3119 | 3544 | 0 | 0 | 426 | |
| SQA037755 | 2B (P2-B) | 3545 | 3829 | 0 | 0 | 285 | |
| SQA037756 | 2C (P2-C) | 3830 | 4795 | 0 | 0 | 966 | |
| SQA037757 | 3A (P3-A) | 4796 | 5026 | 0 | 0 | 231 | |
| SQA037758 | 3B (VPg) | 5027 | 5089 | 0 | 0 | 63 | |
| SQA037759 | protease 3C | 5090 | 5638 | 0 | 0 | 549 | |
| SQA037760 | 3D | 5639 | 6734 | 0 | 1 | 1096 | |
| SQA037761 | 5'UTR | 1 | 571 | 1 | 0 | 571 | |
| SQA037762 | CDS | 572 | 6734 | 0 | 1 | 6163 | |
| SQA037763 | VP4/2 | 572 | 1006 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003562 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPA003563 | 3D | 1690 | 2054 | 0 | 1 | 365 | |
| SPA003564 | 3B (VPg) | 1486 | 1506 | 0 | 0 | 21 | |
| SPA003565 | 3A (P3-A) | 1409 | 1485 | 0 | 0 | 77 | |
| SPA003566 | 2C (P2-C) | 1087 | 1408 | 0 | 0 | 322 | |
| SPA003567 | 2B (P2-B) | 992 | 1086 | 0 | 0 | 95 | |
| SPA003568 | 2A (P2-A) | 850 | 991 | 0 | 0 | 142 | |
| SPA003569 | 1D (VP1) | 567 | 849 | 0 | 0 | 283 | |
| SPA003570 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPA003571 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA003572 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003573 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003574 | CDS | 1 | 2054 | 0 | 0 | 2054 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |