| RVdb StrainID | ANZ07176 | GenBank Accession | JN798556.1 |
| Species | RVA | Sequence Length | 7096 nt |
| Serotype | 82 Checked by RVdb | Serotype (GenBank) | 82 |
| Definition | Human rhinovirus A strain HRV-A82_p1126_sR1026_2009 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A82_p1126_sR1026_2009 | Sampling Date | 2009-03-10 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037713 | 1A (VP4) | 615 | 821 | 0 | 0 | 207 | |
| SQA037714 | 1B (VP2) | 822 | 1601 | 0 | 0 | 780 | |
| SQA037715 | 1C (VP3) | 1602 | 2150 | 0 | 1 | 549 | |
| SQA037716 | 1D (VP1) | 2346 | 3179 | 1 | 0 | 834 | |
| SQA037717 | 2A (P2-A) | 3180 | 3515 | 0 | 1 | 336 | |
| SQA037718 | 2B (P2-B) | 3606 | 3890 | 1 | 0 | 285 | |
| SQA037719 | 2C (P2-C) | 3891 | 4856 | 0 | 0 | 966 | |
| SQA037720 | 3'UTR | 7083 | 7096 | 0 | 1 | 14 | |
| SQA037721 | 3A (P3-A) | 4857 | 5087 | 0 | 0 | 231 | |
| SQA037722 | 3B (VPg) | 5088 | 5150 | 0 | 0 | 63 | |
| SQA037723 | protease 3C | 5151 | 5954 | 0 | 1 | 804 | |
| SQA037724 | 3D | 5955 | 7079 | 1 | 0 | 1125 | |
| SQA037725 | 5'UTR | 2 | 614 | 0 | 0 | 613 | |
| SQA037726 | CDS | 615 | 7082 | 0 | 0 | 6468 | |
| SQA037727 | VP4/2 | 615 | 1049 | 0 | 0 | 435 | |
| SQA037728 | genome | 1 | 7096 | 0 | 1 | 7096 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003601 | protease 3C | 1513 | 1661 | 0 | 1 | 149 | |
| SPA003602 | 3D | 1781 | 2155 | 1 | 0 | 375 | |
| SPA003603 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 | |
| SPA003604 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA003605 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA003606 | 2B (P2-B) | 998 | 1092 | 1 | 0 | 95 | |
| SPA003607 | 2A (P2-A) | 856 | 967 | 0 | 1 | 112 | |
| SPA003608 | 1D (VP1) | 578 | 855 | 1 | 0 | 278 | |
| SPA003609 | 1C (VP3) | 330 | 512 | 0 | 1 | 183 | |
| SPA003610 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA003611 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003612 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003613 | CDS | 1 | 2155 | 0 | 0 | 2155 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |