| RVdb StrainID | ANZ07171 | GenBank Accession | JN798563.1 |
| Species | RVA | Sequence Length | 6868 nt |
| Serotype | 24 Checked by RVdb | Serotype (GenBank) | 24 |
| Definition | Human rhinovirus A strain HRV-A24_p1082_sR439_2007 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A24_p1082_sR439_2007 | Sampling Date | 2007-09-22 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037699 | 1A (VP4) | 552 | 758 | 0 | 0 | 207 | |
| SQA037700 | 1B (VP2) | 759 | 1544 | 0 | 0 | 786 | |
| SQA037701 | 1C (VP3) | 1545 | 2258 | 0 | 0 | 714 | |
| SQA037702 | 1D (VP1) | 2259 | 3113 | 0 | 0 | 855 | |
| SQA037703 | 2A (P2-A) | 3114 | 3539 | 0 | 0 | 426 | |
| SQA037704 | 2B (P2-B) | 3540 | 3824 | 0 | 0 | 285 | |
| SQA037705 | 2C (P2-C) | 3825 | 4790 | 0 | 0 | 966 | |
| SQA037706 | 3A (P3-A) | 4791 | 5021 | 0 | 0 | 231 | |
| SQA037707 | 3B (VPg) | 5022 | 5084 | 0 | 0 | 63 | |
| SQA037708 | protease 3C | 5085 | 5633 | 0 | 0 | 549 | |
| SQA037709 | 3D | 5634 | 6868 | 0 | 1 | 1235 | |
| SQA037710 | 5'UTR | 1 | 551 | 1 | 0 | 551 | |
| SQA037711 | CDS | 552 | 6868 | 0 | 1 | 6317 | |
| SQA037712 | VP4/2 | 552 | 986 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003666 | protease 3C | 1512 | 1694 | 0 | 0 | 183 | |
| SPA003667 | 3D | 1695 | 2105 | 0 | 1 | 411 | |
| SPA003668 | 3B (VPg) | 1491 | 1511 | 0 | 0 | 21 | |
| SPA003669 | 3A (P3-A) | 1414 | 1490 | 0 | 0 | 77 | |
| SPA003670 | 2C (P2-C) | 1092 | 1413 | 0 | 0 | 322 | |
| SPA003671 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA003672 | 2A (P2-A) | 855 | 996 | 0 | 0 | 142 | |
| SPA003673 | 1D (VP1) | 570 | 854 | 0 | 0 | 285 | |
| SPA003674 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003675 | 1B (VP2) | 73 | 331 | 1 | 0 | 259 | |
| SPA003676 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003677 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003678 | CDS | 1 | 2105 | 0 | 0 | 2105 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |