| RVdb StrainID | ANZ07166 | GenBank Accession | JN798576.1 |
| Species | RVA | Sequence Length | 6860 nt |
| Serotype | 80 Checked by RVdb | Serotype (GenBank) | 80 |
| Definition | Human rhinovirus A strain HRV-A80_p1183_sR1526_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A80_p1183_sR1526_2009 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037685 | 1A (VP4) | 486 | 692 | 0 | 0 | 207 | |
| SQA037686 | 1B (VP2) | 693 | 1478 | 0 | 0 | 786 | |
| SQA037687 | 1C (VP3) | 1479 | 2192 | 0 | 0 | 714 | |
| SQA037688 | 1D (VP1) | 2193 | 3068 | 0 | 0 | 876 | |
| SQA037689 | 2A (P2-A) | 3069 | 3497 | 0 | 0 | 429 | |
| SQA037690 | 2B (P2-B) | 3498 | 3782 | 0 | 0 | 285 | |
| SQA037691 | 2C (P2-C) | 3783 | 4745 | 0 | 0 | 963 | |
| SQA037692 | 3A (P3-A) | 4746 | 4976 | 0 | 0 | 231 | |
| SQA037693 | 3B (VPg) | 4977 | 5039 | 0 | 0 | 63 | |
| SQA037694 | protease 3C | 5040 | 5588 | 0 | 0 | 549 | |
| SQA037695 | 3D | 5589 | 6860 | 0 | 1 | 1272 | |
| SQA037696 | 5'UTR | 1 | 485 | 1 | 0 | 485 | |
| SQA037697 | CDS | 486 | 6860 | 0 | 1 | 6375 | |
| SQA037698 | VP4/2 | 486 | 920 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003731 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA003732 | 3D | 1702 | 2125 | 0 | 1 | 424 | |
| SPA003733 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA003734 | 3A (P3-A) | 1421 | 1497 | 0 | 0 | 77 | |
| SPA003735 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA003736 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA003737 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA003738 | 1D (VP1) | 570 | 861 | 0 | 0 | 292 | |
| SPA003739 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA003740 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA003741 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003742 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003743 | CDS | 1 | 2125 | 0 | 0 | 2125 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |