| RVdb StrainID | ANZ07161 | GenBank Accession | JN798582.1 |
| Species | RVA | Sequence Length | 6837 nt |
| Serotype | 10 Checked by RVdb | Serotype (GenBank) | 10 |
| Definition | Human rhinovirus A strain HRV-A10_p1160_sR1150_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A10_p1160_sR1150_2009 | Sampling Date | 2009-02-05 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037671 | 1A (VP4) | 520 | 726 | 0 | 0 | 207 | |
| SQA037672 | 1B (VP2) | 727 | 1521 | 0 | 0 | 795 | |
| SQA037673 | 1C (VP3) | 1522 | 2235 | 0 | 0 | 714 | |
| SQA037674 | 1D (VP1) | 2236 | 3099 | 0 | 0 | 864 | |
| SQA037675 | 2A (P2-A) | 3100 | 3525 | 0 | 0 | 426 | |
| SQA037676 | 2B (P2-B) | 3526 | 3810 | 0 | 0 | 285 | |
| SQA037677 | 2C (P2-C) | 3811 | 4776 | 0 | 0 | 966 | |
| SQA037678 | 3A (P3-A) | 4777 | 5007 | 0 | 0 | 231 | |
| SQA037679 | 3B (VPg) | 5008 | 5070 | 0 | 0 | 63 | |
| SQA037680 | protease 3C | 5071 | 5619 | 0 | 0 | 549 | |
| SQA037681 | 3D | 5620 | 6837 | 0 | 1 | 1218 | |
| SQA037682 | 5'UTR | 1 | 519 | 1 | 0 | 519 | |
| SQA037683 | CDS | 520 | 6837 | 0 | 1 | 6318 | |
| SQA037684 | VP4/2 | 520 | 955 | 0 | 0 | 436 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003796 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA003797 | 3D | 1701 | 2106 | 0 | 1 | 406 | |
| SPA003798 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA003799 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA003800 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA003801 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA003802 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA003803 | 1D (VP1) | 573 | 860 | 0 | 0 | 288 | |
| SPA003804 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA003805 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA003806 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003807 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003808 | CDS | 1 | 2106 | 0 | 0 | 2106 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |