| RVdb StrainID | ANZ07156 | GenBank Accession | JN798587.1 |
| Species | RVA | Sequence Length | 7008 nt |
| Serotype | 53 Checked by RVdb | Serotype (GenBank) | 53 |
| Definition | Human rhinovirus A strain HRV-A53_p1164_sR1163_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A53_p1164_sR1163_2009 | Sampling Date | 2009-09-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037657 | 1A (VP4) | 559 | 765 | 0 | 0 | 207 | |
| SQA037658 | 1B (VP2) | 766 | 1554 | 0 | 0 | 789 | |
| SQA037659 | 1C (VP3) | 1555 | 2268 | 0 | 0 | 714 | |
| SQA037660 | 1D (VP1) | 2269 | 3144 | 0 | 0 | 876 | |
| SQA037661 | 2A (P2-A) | 3145 | 3573 | 0 | 0 | 429 | |
| SQA037662 | 2B (P2-B) | 3574 | 3858 | 0 | 0 | 285 | |
| SQA037663 | 2C (P2-C) | 3859 | 4821 | 0 | 0 | 963 | |
| SQA037664 | 3A (P3-A) | 4822 | 5055 | 0 | 0 | 234 | |
| SQA037665 | 3B (VPg) | 5056 | 5118 | 0 | 0 | 63 | |
| SQA037666 | protease 3C | 5119 | 5667 | 0 | 0 | 549 | |
| SQA037667 | 3D | 5668 | 7008 | 0 | 1 | 1341 | |
| SQA037668 | 5'UTR | 1 | 558 | 1 | 0 | 558 | |
| SQA037669 | CDS | 559 | 7008 | 0 | 1 | 6450 | |
| SQA037670 | VP4/2 | 559 | 993 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003861 | protease 3C | 1521 | 1703 | 0 | 0 | 183 | |
| SPA003862 | 3D | 1704 | 2150 | 0 | 1 | 447 | |
| SPA003863 | 3B (VPg) | 1500 | 1520 | 0 | 0 | 21 | |
| SPA003864 | 3A (P3-A) | 1422 | 1499 | 0 | 0 | 78 | |
| SPA003865 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA003866 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA003867 | 2A (P2-A) | 863 | 1005 | 0 | 0 | 143 | |
| SPA003868 | 1D (VP1) | 571 | 862 | 0 | 0 | 292 | |
| SPA003869 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003870 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003871 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003872 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003873 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |