| RVdb StrainID | ANZ07151 | GenBank Accession | JN815241.1 |
| Species | RVA | Sequence Length | 6851 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus A strain HRV-A36_p1201_sR3023_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A36_p1201_sR3023_2009 | Sampling Date | 2009-04-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037643 | 1A (VP4) | 528 | 734 | 0 | 0 | 207 | |
| SQA037644 | 1B (VP2) | 735 | 1538 | 0 | 0 | 804 | |
| SQA037645 | 1C (VP3) | 1539 | 2252 | 0 | 0 | 714 | |
| SQA037646 | 1D (VP1) | 2253 | 3119 | 0 | 0 | 867 | |
| SQA037647 | 2A (P2-A) | 3120 | 3545 | 0 | 0 | 426 | |
| SQA037648 | 2B (P2-B) | 3546 | 3830 | 0 | 0 | 285 | |
| SQA037649 | 2C (P2-C) | 3831 | 4793 | 0 | 0 | 963 | |
| SQA037650 | 3A (P3-A) | 4794 | 5021 | 0 | 0 | 228 | |
| SQA037651 | 3B (VPg) | 5022 | 5084 | 0 | 0 | 63 | |
| SQA037652 | protease 3C | 5085 | 5633 | 0 | 0 | 549 | |
| SQA037653 | 3D | 5634 | 6851 | 0 | 1 | 1218 | |
| SQA037654 | 5'UTR | 1 | 527 | 1 | 0 | 527 | |
| SQA037655 | CDS | 528 | 6851 | 0 | 1 | 6324 | |
| SQA037656 | VP4/2 | 528 | 962 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004004 | protease 3C | 1520 | 1702 | 0 | 0 | 183 | |
| SPA004005 | 3D | 1703 | 2108 | 0 | 1 | 406 | |
| SPA004006 | 3B (VPg) | 1499 | 1519 | 0 | 0 | 21 | |
| SPA004007 | 3A (P3-A) | 1423 | 1498 | 0 | 0 | 76 | |
| SPA004008 | 2C (P2-C) | 1102 | 1422 | 0 | 0 | 321 | |
| SPA004009 | 2B (P2-B) | 1007 | 1101 | 0 | 0 | 95 | |
| SPA004010 | 2A (P2-A) | 865 | 1006 | 0 | 0 | 142 | |
| SPA004011 | 1D (VP1) | 576 | 864 | 0 | 0 | 289 | |
| SPA004012 | 1C (VP3) | 338 | 575 | 0 | 0 | 238 | |
| SPA004013 | 1B (VP2) | 70 | 337 | 0 | 0 | 268 | |
| SPA004014 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004015 | VP4/2 | 1 | 146 | 0 | 0 | 146 | |
| SPA004016 | CDS | 1 | 2108 | 0 | 0 | 2108 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |