| RVdb StrainID | ANZ07146 | GenBank Accession | JN815252.1 |
| Species | RVA | Sequence Length | 7105 nt |
| Serotype | 29 Corrected by RVdb | Serotype (GenBank) | 44 |
| Definition | Human rhinovirus A strain HRV-A44_p1191_sR1286_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A44_p1191_sR1286_2009 | Sampling Date | 2009-09-26 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037629 | 1A (VP4) | 653 | 859 | 0 | 0 | 207 | |
| SQA037630 | 1B (VP2) | 860 | 1657 | 0 | 0 | 798 | |
| SQA037631 | 1C (VP3) | 1658 | 2371 | 0 | 0 | 714 | |
| SQA037632 | 1D (VP1) | 2372 | 3214 | 0 | 0 | 843 | |
| SQA037633 | 2A (P2-A) | 3215 | 3640 | 0 | 0 | 426 | |
| SQA037634 | 2B (P2-B) | 3641 | 3925 | 0 | 0 | 285 | |
| SQA037635 | 2C (P2-C) | 3926 | 4891 | 0 | 0 | 966 | |
| SQA037636 | 3A (P3-A) | 4892 | 5122 | 0 | 0 | 231 | |
| SQA037637 | 3B (VPg) | 5123 | 5185 | 0 | 0 | 63 | |
| SQA037638 | protease 3C | 5186 | 5734 | 0 | 0 | 549 | |
| SQA037639 | 3D | 5735 | 7105 | 0 | 1 | 1371 | |
| SQA037640 | 5'UTR | 40 | 652 | 0 | 0 | 613 | |
| SQA037641 | CDS | 653 | 7105 | 0 | 1 | 6453 | |
| SQA037642 | VP4/2 | 653 | 1087 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004069 | protease 3C | 1512 | 1694 | 0 | 0 | 183 | |
| SPA004070 | 3D | 1695 | 2151 | 0 | 1 | 457 | |
| SPA004071 | 3B (VPg) | 1491 | 1511 | 0 | 0 | 21 | |
| SPA004072 | 3A (P3-A) | 1414 | 1490 | 0 | 0 | 77 | |
| SPA004073 | 2C (P2-C) | 1092 | 1413 | 0 | 0 | 322 | |
| SPA004074 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA004075 | 2A (P2-A) | 855 | 996 | 0 | 0 | 142 | |
| SPA004076 | 1D (VP1) | 574 | 854 | 0 | 0 | 281 | |
| SPA004077 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
| SPA004078 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
| SPA004079 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004080 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004081 | CDS | 1 | 2151 | 0 | 0 | 2151 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |