| RVdb StrainID | ANZ07141 | GenBank Accession | JN837692.1 |
| Species | RVA | Sequence Length | 7079 nt |
| Serotype | 47 Checked by RVdb | Serotype (GenBank) | 47 |
| Definition | Human rhinovirus A strain HRV-A47_p1064_sR982_2009_g2 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A47_p1064_sR982_2009_g2 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037613 | 1A (VP4) | 564 | 770 | 0 | 0 | 207 | |
| SQA037614 | 1B (VP2) | 771 | 1565 | 0 | 0 | 795 | |
| SQA037615 | 1C (VP3) | 1566 | 2279 | 0 | 0 | 714 | |
| SQA037616 | 1D (VP1) | 2280 | 3137 | 0 | 0 | 858 | |
| SQA037617 | 2A (P2-A) | 3138 | 3563 | 0 | 0 | 426 | |
| SQA037618 | 2B (P2-B) | 3564 | 3848 | 0 | 0 | 285 | |
| SQA037619 | 2C (P2-C) | 3849 | 4814 | 0 | 0 | 966 | |
| SQA037620 | 3'UTR | 7041 | 7079 | 0 | 1 | 39 | |
| SQA037621 | 3A (P3-A) | 4815 | 5045 | 0 | 0 | 231 | |
| SQA037622 | 3B (VPg) | 5046 | 5108 | 0 | 0 | 63 | |
| SQA037623 | protease 3C | 5109 | 5657 | 0 | 0 | 549 | |
| SQA037624 | 3D | 5658 | 7037 | 0 | 0 | 1380 | |
| SQA037625 | 5'UTR | 1 | 563 | 1 | 0 | 563 | |
| SQA037626 | CDS | 564 | 7040 | 0 | 0 | 6477 | |
| SQA037627 | VP4/2 | 564 | 998 | 0 | 0 | 435 | |
| SQA037628 | genome | 1 | 7079 | 1 | 1 | 7079 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003913 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA003914 | 3D | 1699 | 2158 | 0 | 0 | 460 | |
| SPA003915 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA003916 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA003917 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA003918 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA003919 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA003920 | 1D (VP1) | 573 | 858 | 0 | 0 | 286 | |
| SPA003921 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA003922 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA003923 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003924 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003925 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |