| RVdb StrainID | ANZ06926 | GenBank Accession | JN990705.1 |
| Species | RVA | Sequence Length | 7073 nt |
| Serotype | 80 Checked by RVdb | Serotype (GenBank) | 80 |
| Definition | Human rhinovirus A strain HRV-A80_p1187_sR2954_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A80_p1187_sR2954_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037477 | 1A (VP4) | 604 | 810 | 0 | 0 | 207 | |
| SQA037478 | 1B (VP2) | 811 | 1596 | 0 | 0 | 786 | |
| SQA037479 | 1C (VP3) | 1597 | 2310 | 0 | 0 | 714 | |
| SQA037480 | 1D (VP1) | 2311 | 3186 | 0 | 0 | 876 | |
| SQA037481 | 2A (P2-A) | 3187 | 3615 | 0 | 0 | 429 | |
| SQA037482 | 2B (P2-B) | 3616 | 3900 | 0 | 0 | 285 | |
| SQA037483 | 2C (P2-C) | 3901 | 4863 | 0 | 0 | 963 | |
| SQA037484 | 3A (P3-A) | 4864 | 5094 | 0 | 0 | 231 | |
| SQA037485 | 3B (VPg) | 5095 | 5157 | 0 | 0 | 63 | |
| SQA037486 | protease 3C | 5158 | 5706 | 0 | 0 | 549 | |
| SQA037487 | 3D | 5707 | 7073 | 0 | 1 | 1367 | |
| SQA037488 | 5'UTR | 1 | 603 | 1 | 0 | 603 | |
| SQA037489 | CDS | 604 | 7073 | 0 | 1 | 6470 | |
| SQA037490 | VP4/2 | 604 | 1038 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004146 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA004147 | 3D | 1702 | 2156 | 0 | 1 | 455 | |
| SPA004148 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 | |
| SPA004149 | 3A (P3-A) | 1421 | 1497 | 0 | 0 | 77 | |
| SPA004150 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA004151 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA004152 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA004153 | 1D (VP1) | 570 | 861 | 0 | 0 | 292 | |
| SPA004154 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA004155 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004156 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004157 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004158 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |