| RVdb StrainID | ANZ06911 | GenBank Accession | JQ245965.1 |
| Species | RVA | Sequence Length | 6870 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Human rhinovirus A strain HRV-A101_p1257_s2107_1999 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A101_p1257_s2107_1999 | Sampling Date | 1999 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037461 | 1A (VP4) | 416 | 622 | 0 | 0 | 207 | |
| SQA037462 | 1B (VP2) | 623 | 1405 | 0 | 0 | 783 | |
| SQA037463 | 1C (VP3) | 1406 | 2119 | 0 | 0 | 714 | |
| SQA037464 | 1D (VP1) | 2120 | 2986 | 0 | 0 | 867 | |
| SQA037465 | 2A (P2-A) | 2987 | 3415 | 0 | 0 | 429 | |
| SQA037466 | 2B (P2-B) | 3416 | 3700 | 0 | 0 | 285 | |
| SQA037467 | 2C (P2-C) | 3701 | 4663 | 0 | 0 | 963 | |
| SQA037468 | 3A (P3-A) | 4664 | 4897 | 0 | 0 | 234 | |
| SQA037469 | 3B (VPg) | 4898 | 4960 | 0 | 0 | 63 | |
| SQA037470 | protease 3C | 4961 | 5509 | 0 | 0 | 549 | |
| SQA037471 | 3D | 5510 | 6870 | 0 | 1 | 1361 | |
| SQA037472 | 5'UTR | 1 | 415 | 1 | 0 | 415 | |
| SQA037473 | CDS | 416 | 6870 | 0 | 1 | 6455 | |
| SQA037474 | VP4/2 | 416 | 850 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004834 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA004835 | 3D | 1699 | 2151 | 0 | 1 | 453 | |
| SPA004836 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA004837 | 3A (P3-A) | 1417 | 1494 | 0 | 0 | 78 | |
| SPA004838 | 2C (P2-C) | 1096 | 1416 | 0 | 0 | 321 | |
| SPA004839 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA004840 | 2A (P2-A) | 858 | 1000 | 0 | 0 | 143 | |
| SPA004841 | 1D (VP1) | 569 | 857 | 0 | 0 | 289 | |
| SPA004842 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA004843 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA004844 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004845 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004846 | CDS | 1 | 2151 | 0 | 0 | 2151 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |