| RVdb StrainID | ANZ06816 | GenBank Accession | JQ747749.1 |
| Species | RVA | Sequence Length | 6998 nt |
| Serotype | 103 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain HRV-A103_p1038_s6391_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A103_p1038_s6391_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037423 | 1A (VP4) | 524 | 730 | 0 | 0 | 207 | |
| SQA037424 | 1B (VP2) | 731 | 1516 | 0 | 0 | 786 | |
| SQA037425 | 1C (VP3) | 1517 | 2233 | 0 | 0 | 717 | |
| SQA037426 | 1D (VP1) | 2234 | 3124 | 0 | 0 | 891 | |
| SQA037427 | 2A (P2-A) | 3125 | 3553 | 0 | 0 | 429 | |
| SQA037428 | 2B (P2-B) | 3554 | 3838 | 0 | 0 | 285 | |
| SQA037429 | 2C (P2-C) | 3839 | 4801 | 0 | 0 | 963 | |
| SQA037430 | 3A (P3-A) | 4802 | 5035 | 0 | 0 | 234 | |
| SQA037431 | 3B (VPg) | 5036 | 5098 | 0 | 0 | 63 | |
| SQA037432 | protease 3C | 5099 | 5647 | 0 | 0 | 549 | |
| SQA037433 | 3D | 5648 | 6998 | 0 | 1 | 1351 | |
| SQA037434 | 5'UTR | 1 | 523 | 1 | 0 | 523 | |
| SQA037435 | CDS | 524 | 6998 | 0 | 1 | 6475 | |
| SQA037436 | VP4/2 | 524 | 958 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004795 | protease 3C | 1526 | 1708 | 0 | 0 | 183 | |
| SPA004796 | 3D | 1709 | 2158 | 0 | 1 | 450 | |
| SPA004797 | 3B (VPg) | 1505 | 1525 | 0 | 0 | 21 | |
| SPA004798 | 3A (P3-A) | 1427 | 1504 | 0 | 0 | 78 | |
| SPA004799 | 2C (P2-C) | 1106 | 1426 | 0 | 0 | 321 | |
| SPA004800 | 2B (P2-B) | 1011 | 1105 | 0 | 0 | 95 | |
| SPA004801 | 2A (P2-A) | 868 | 1010 | 0 | 0 | 143 | |
| SPA004802 | 1D (VP1) | 571 | 867 | 0 | 0 | 297 | |
| SPA004803 | 1C (VP3) | 332 | 570 | 0 | 0 | 239 | |
| SPA004804 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004805 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004806 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004807 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |