| RVdb StrainID | ANZ06801 | GenBank Accession | JX025558.1 |
| Species | RVA | Sequence Length | 6375 nt |
| Serotype | 58 Checked by RVdb | Serotype (GenBank) | 58 |
| Definition | Human rhinovirus A strain HRV-A58_p1183_sR1530_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A58_p1183_sR1530_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037392 | 1A (VP4) | 536 | 742 | 0 | 0 | 207 | |
| SQA037393 | 1B (VP2) | 743 | 1537 | 0 | 0 | 795 | |
| SQA037394 | 1C (VP3) | 1538 | 2251 | 0 | 0 | 714 | |
| SQA037395 | 1D (VP1) | 2252 | 3121 | 0 | 0 | 870 | |
| SQA037396 | 2A (P2-A) | 3122 | 3547 | 0 | 0 | 426 | |
| SQA037397 | 2B (P2-B) | 3548 | 3832 | 0 | 0 | 285 | |
| SQA037398 | 2C (P2-C) | 3833 | 4795 | 0 | 0 | 963 | |
| SQA037399 | 3A (P3-A) | 4796 | 5023 | 0 | 0 | 228 | |
| SQA037400 | 3B (VPg) | 5024 | 5086 | 0 | 0 | 63 | |
| SQA037401 | protease 3C | 5087 | 5635 | 0 | 0 | 549 | |
| SQA037402 | 3D | 5636 | 6375 | 0 | 1 | 740 | |
| SQA037403 | 5'UTR | 1 | 535 | 1 | 0 | 535 | |
| SQA037404 | CDS | 536 | 6375 | 0 | 1 | 5840 | |
| SQA037405 | VP4/2 | 536 | 970 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005052 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA005053 | 3D | 1701 | 1946 | 0 | 1 | 246 | |
| SPA005054 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA005055 | 3A (P3-A) | 1421 | 1496 | 0 | 0 | 76 | |
| SPA005056 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA005057 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA005058 | 2A (P2-A) | 863 | 1004 | 0 | 0 | 142 | |
| SPA005059 | 1D (VP1) | 573 | 862 | 0 | 0 | 290 | |
| SPA005060 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA005061 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA005062 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA005063 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA005064 | CDS | 1 | 1946 | 0 | 0 | 1946 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |