| RVdb StrainID | ANZ06781 | GenBank Accession | JX193797.1 |
| Species | RVA | Sequence Length | 6892 nt |
| Serotype | 104 Corrected by RVdb | Serotype (GenBank) | 24 |
| Definition | Human rhinovirus A strain HRV-A24_p1131_sR2053_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A24_p1131_sR2053_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037360 | 1A (VP4) | 466 | 507 | 0 | 1 | 42 | |
| SQA037361 | 1B (VP2) | 673 | 1458 | 0 | 0 | 786 | |
| SQA037362 | 1C (VP3) | 1459 | 2172 | 0 | 0 | 714 | |
| SQA037363 | 1D (VP1) | 2173 | 3027 | 0 | 0 | 855 | |
| SQA037364 | 2A (P2-A) | 3028 | 3453 | 0 | 0 | 426 | |
| SQA037365 | 2B (P2-B) | 3454 | 3738 | 0 | 0 | 285 | |
| SQA037366 | 2C (P2-C) | 3739 | 4704 | 0 | 0 | 966 | |
| SQA037367 | 3A (P3-A) | 4705 | 4935 | 0 | 0 | 231 | |
| SQA037368 | 3B (VPg) | 4936 | 4998 | 0 | 0 | 63 | |
| SQA037369 | protease 3C | 4999 | 5547 | 0 | 0 | 549 | |
| SQA037370 | 3D | 5548 | 6892 | 0 | 1 | 1345 | |
| SQA037371 | 5'UTR | 1 | 465 | 1 | 0 | 465 | |
| SQA037372 | CDS | 466 | 6892 | 0 | 1 | 6427 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA005142 | protease 3C | 1512 | 1694 | 0 | 0 | 183 | |
| SPA005143 | 3D | 1695 | 2142 | 0 | 1 | 448 | |
| SPA005144 | 3B (VPg) | 1491 | 1511 | 0 | 0 | 21 | |
| SPA005145 | 3A (P3-A) | 1414 | 1490 | 0 | 0 | 77 | |
| SPA005146 | 2C (P2-C) | 1092 | 1413 | 0 | 0 | 322 | |
| SPA005147 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA005148 | 2A (P2-A) | 855 | 996 | 0 | 0 | 142 | |
| SPA005149 | 1D (VP1) | 570 | 854 | 0 | 0 | 285 | |
| SPA005150 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA005151 | 1B (VP2) | 147 | 331 | 1 | 0 | 185 | |
| SPA005152 | 1A (VP4) | 1 | 14 | 0 | 1 | 14 | |
| SPA005153 | CDS | 1 | 2142 | 0 | 0 | 2142 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |