| RVdb StrainID | ANZ00601 | GenBank Accession | NC_038311.1 |
| Species | RVA | Sequence Length | 7137 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Human rhinovirus 1 strain ATCC VR-1559, complete genome | GenBank Submission Date | 2018-08-24 |
| Strain Name | ATCC VR-1559 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 573824 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA033079 | 1A (VP4) | 627 | 833 | 0 | 0 | 207 | |
| SQA033080 | 1B (VP2) | 834 | 1622 | 0 | 0 | 789 | |
| SQA033081 | 1C (VP3) | 1623 | 2336 | 0 | 0 | 714 | |
| SQA033082 | 1D (VP1) | 2337 | 3197 | 0 | 0 | 861 | |
| SQA033083 | 2A (P2-A) | 3198 | 3623 | 0 | 0 | 426 | |
| SQA033084 | 2B (P2-B) | 3624 | 3908 | 0 | 0 | 285 | |
| SQA033085 | 2C (P2-C) | 3909 | 4874 | 0 | 0 | 966 | |
| SQA033086 | 3'UTR | 7101 | 7137 | 0 | 1 | 37 | |
| SQA033087 | 3A (P3-A) | 4875 | 5105 | 0 | 0 | 231 | |
| SQA033088 | 3B (VPg) | 5106 | 5168 | 0 | 0 | 63 | |
| SQA033089 | protease 3C | 5169 | 5717 | 0 | 0 | 549 | |
| SQA033090 | 3D | 5718 | 7097 | 0 | 0 | 1380 | |
| SQA033091 | 5'UTR | 1 | 626 | 0 | 0 | 626 | |
| SQA033092 | CDS | 627 | 7100 | 0 | 0 | 6474 | |
| SQA033093 | genome | 1 | 7137 | 0 | 1 | 7137 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033735 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA033736 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA033737 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA033738 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA033739 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA033740 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA033741 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA033742 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA033743 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA033744 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA033745 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA033746 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA033747 | CDS | 1 | 2157 | 0 | 0 | 2157 | |
| SPA034757 | VP4/2 | 1 | 69 | 0 | 1 | 69 | |
| SPA034759 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034760 | VP4/2 | 1 | 76 | 1 | 0 | 76 | |
| SPA034762 | 1B (VP2) | 1 | 263 | 0 | 0 | 263 | |
| SPA034763 | 1C (VP3) | 1 | 238 | 0 | 0 | 238 | |
| SPA034765 | 1D (VP1) | 1 | 287 | 0 | 1 | 287 | |
| SPA034766 | 2A (P2-A) | 1 | 142 | 0 | 0 | 142 | |
| SPA034768 | 2B (P2-B) | 1 | 95 | 0 | 0 | 95 | |
| SPA034769 | 2C (P2-C) | 1 | 322 | 0 | 0 | 322 | |
| SPA034770 | 3A (P3-A) | 1 | 77 | 0 | 0 | 77 | |
| SPA034771 | 3B (VPg) | 1 | 21 | 0 | 0 | 21 | |
| SPA034772 | protease 3C | 1 | 183 | 0 | 0 | 183 | |
| SPA034784 | 3D | 1 | 456 | 0 | 0 | 456 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |