| RVdb StrainID | ANS07943 | GenBank Accession | FJ445134.1 |
| Species | RVA | Sequence Length | 7109 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Human rhinovirus 49 isolate F04, complete genome | GenBank Submission Date | 2009-04-10 |
| Strain Name | F04 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 44131 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA030429 | 1A (VP4) | 616 | 822 | 0 | 0 | 207 | |
| SQA030430 | 1B (VP2) | 823 | 1605 | 0 | 0 | 783 | |
| SQA030431 | 1C (VP3) | 1606 | 2316 | 0 | 0 | 711 | |
| SQA030432 | 1D (VP1) | 2317 | 3165 | 0 | 0 | 849 | |
| SQA030433 | 2A (P2-A) | 3166 | 3591 | 0 | 0 | 426 | |
| SQA030434 | 2B (P2-B) | 3592 | 3876 | 0 | 0 | 285 | |
| SQA030435 | 2C (P2-C) | 3877 | 4842 | 0 | 0 | 966 | |
| SQA030436 | 3'UTR | 7069 | 7109 | 0 | 0 | 41 | |
| SQA030437 | 3A (P3-A) | 4843 | 5073 | 0 | 0 | 231 | |
| SQA030438 | 3B (VPg) | 5074 | 5136 | 0 | 0 | 63 | |
| SQA030439 | protease 3C | 5137 | 5685 | 0 | 0 | 549 | |
| SQA030440 | 3D | 5686 | 7065 | 0 | 0 | 1380 | |
| SQA030441 | 5'UTR | 1 | 615 | 0 | 0 | 615 | |
| SQA030442 | CDS | 616 | 7068 | 0 | 0 | 6453 | |
| SQA030443 | VP4/2 | 616 | 1050 | 0 | 0 | 435 | |
| SQA030444 | genome | 1 | 7109 | 0 | 0 | 7109 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA001373 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA001374 | 3D | 1691 | 2150 | 0 | 0 | 460 | |
| SPA001375 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA001376 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA001377 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA001378 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA001379 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA001380 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA001381 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA001382 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA001383 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA001384 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA001385 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19213880 | Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. | 2009 | Science | View More |